LOCUS       XM_039085495            2767 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus slingshot protein phosphatase 3
            (Ssh3), transcript variant X3, mRNA.
ACCESSION   XM_039085495
VERSION     XM_039085495.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2767
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2767
                     /gene="Ssh3"
                     /note="slingshot protein phosphatase 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 15 ESTs, 1 long SRA read, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     13 samples with support for all annotated introns"
                     /db_xref="GeneID:365396"
                     /db_xref="RGD:1308679"
     CDS             39..2114
                     /gene="Ssh3"
                     /codon_start=1
                     /product="protein phosphatase Slingshot homolog 3 isoform
                     X3"
                     /protein_id="XP_038941423.1"
                     /db_xref="GeneID:365396"
                     /db_xref="RGD:1308679"
                     /translation="MITPGSACHPTPWSTLQLERRKGWIFLVYLRGGGSTPRPDPCSS
                     GTGPSDKTQRPAPTQSFAVLRGAVLGLQDGGEGNDAAEADPEPMEKPSGEEQPAEDQT
                     DNGQGSQSPWKQVQKRHLHLMVELLRPQDDIRLAAQLEAARPPRLRYLLVVSTGEGLS
                     EEETILLGVDFPDSSSHSCTLGLVLPLWSDTQVYLDGDGGFSVTSGGQSRIFKPVSIQ
                     TMWATLQVLHQACEVALGSGLVPGGSALAWATHYQEKLNSDQGCLNEWMAMSDLESFR
                     PPNAEPGQASEQEQMEQAILAELWQVLDASDLDSVTSKEIRQALELRLGCPLQQYRDF
                     IDNQMLLLMAQQDRASRIFPHLYLGSEWNAANLEELQRNRVSHILNMAREIDNFFPER
                     FTYHNVRVWDEESAQLLPHWKETHRFIEDARLLGLKGNGLTISHLHRAQGTRVLVHCK
                     MGVSRSAATVLAYAMKQYGWGLEQALIHVQELRPIVRPNPGFLRQLQTYQGILTASRQ
                     SHVWEQKVGVVSPEEPLAPEVSTPLPPLPPEPGGSGEGMVMGQKGSQETPKEELGLRP
                     RINLRGVMRSISLLEPSSEPESTTEAGDLPEVFSSDEEPLHPFSQLSRAKGGQRVCKG
                     PWPALKSRQSVVALHSAALVASRARAFQGQGQGQGQEQRETGTSSTPRLRKVIRQASV
                     DDSREEGKA"
ORIGIN      
        1 taggacagga gttcctggag attctgaaat ttccctggat gataacccca ggttctgcct
       61 gccacccaac tccatggtcc acactccagc tggagagaag aaaaggctgg atcttcctag
      121 tctacctacg gggtgggggg agcaccccac gcccagatcc ctgcagctca ggcacaggac
      181 cgagtgataa gacgcagagg ccggctccaa cgcagagttt tgctgttctc cgaggggctg
      241 tcctgggact tcaggatgga ggggaaggga atgatgcagc tgaggctgac cctgagccaa
      301 tggagaagcc ctcaggtgag gagcagcccg ctgaggacca gactgacaac gggcaagggt
      361 cccagagtcc ctggaaacaa gtgcagaagc ggcacctgca ccttatggtg gagctgctga
      421 ggccacagga tgatatccgc ctggcagccc agctggaggc agcccgaccc ccaaggcttc
      481 gctatctgct ggtagtgtcc acaggagagg gtctgagtga ggaggagacc atccttcttg
      541 gggtggactt ccctgacagc agttcccaca gctgcaccct gggcctggtc ttgcccctct
      601 ggagtgatac ccaggtgtac ctggatggtg atgggggctt cagtgtgaca tctggtggtc
      661 agagccgaat cttcaagcct gtctctatcc agaccatgtg ggccacactg caggtattgc
      721 accaggcatg tgaggtggct ctaggcagtg gccttgtgcc tggtggcagt gcccttgcct
      781 gggccactca ctaccaggag aaactgaact ctgaccaggg ttgcctcaat gagtggatgg
      841 ccatgtctga cctggagtcc tttcgaccac ctaatgctga gcctggacag gcttcagaac
      901 aagagcagat ggaacaggca atcttggctg aattgtggca ggtgttggat gccagtgacc
      961 tggacagtgt tacgtctaaa gagatccgtc aggccctgga gctgcgtcta ggatgccctc
     1021 tccagcagta ccgtgacttt attgacaacc agatgctgct gctcatggcc cagcaagacc
     1081 gggcctcccg catcttcccc cacctctact tgggttctga atggaatgct gccaacctgg
     1141 aggaacttca gagaaacagg gtaagtcaca tcctgaacat ggcccgggag attgacaact
     1201 tcttccccga acgattcacc tatcacaatg tacgtgtctg ggacgaagag tcagcacagc
     1261 tgctacccca ctggaaggag acacatcgat tcattgagga tgccaggcta ctggggttga
     1321 aagggaatgg actgaccata tcccacctcc atagagcaca gggcactcgg gtgctagtcc
     1381 actgtaagat gggcgtcagc cgttctgctg ccacggtact ggcctatgcc atgaaacagt
     1441 atggctgggg cctcgagcaa gccctgatcc acgtgcagga gctccggccc attgtacgcc
     1501 ccaaccctgg cttcctgcgc cagctacaga cctaccaggg cattctgact gccagccggc
     1561 agagccacgt ctgggagcag aaagtgggtg tggtctcccc agaggagccc ttggcacctg
     1621 aagtttctac accattgcca cctcttccac cagaaccagg gggcagtgga gaggggatgg
     1681 ttatgggcca gaaaggaagc caggaaaccc caaaagaaga gcttggactg cggccccgca
     1741 tcaacctccg gggggtcatg cgctccatca gtcttctgga gccctcctca gagccagaga
     1801 gtaccacaga ggctggagac ctgccagaag ttttctcttc tgatgaagaa cctcttcatc
     1861 ccttctctca gctttcaaga gccaaaggtg gccagcgggt ctgcaaggga ccttggcctg
     1921 ccctgaagtc tcgacagtct gtggttgccc ttcatagtgc tgccctggtg gctagcaggg
     1981 cacgagcctt ccaggggcaa gggcaagggc agggccaaga gcagagggag actggtacat
     2041 cttctacacc taggctccgg aaggtgataa ggcaggccag tgtagatgac agcagggagg
     2101 agggcaaggc ctgaggcctt atgccatatc cccacctaga cactaagcaa tgattggtca
     2161 ctttgcattg ggcctgcaca ctccctatag ctccttccca gcagtcctca gacccttgtc
     2221 acttcctgca accttaggtc tcagacccat gtctacctgt taagggctca agactttttc
     2281 tacatagggt atgggttaga accattcaag gtgcctttaa gggtaacaac accctagttt
     2341 cattttacac tcactctctt aacactttgt gcagccctgg aattaaaacc ggaaattttt
     2401 agggtgggtt ttctagttca catctccctt gctctcaact gctggccatt ccaccctgtg
     2461 tcttttaccc tctcctaccg cagtcctaca ggcagctagg ccagggaacc agtggccaca
     2521 aaggcagata gcactttcag cccccagtcc cacaggctct gagggggctc ccaggttacc
     2581 acccacccac acaactgacc agagtctctg ccgttgccct catttctccc atgccccaca
     2641 ctgggtcaca gggcactgag ctaaaaagag agtcttcttg ttcttgaaga tctctggcta
     2701 gtcaagtttt tcatagtcgt atagtatctg gctttgtact gagaaataaa agacattttc
     2761 atattaa
//
