LOCUS       XM_039085491            2779 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus slingshot protein phosphatase 3
            (Ssh3), transcript variant X2, mRNA.
ACCESSION   XM_039085491
VERSION     XM_039085491.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2779
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2779
                     /gene="Ssh3"
                     /note="slingshot protein phosphatase 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 15 ESTs, 1 long SRA read, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     12 samples with support for all annotated introns"
                     /db_xref="GeneID:365396"
                     /db_xref="RGD:1308679"
     CDS             39..2126
                     /gene="Ssh3"
                     /codon_start=1
                     /product="protein phosphatase Slingshot homolog 3 isoform
                     X2"
                     /protein_id="XP_038941419.1"
                     /db_xref="GeneID:365396"
                     /db_xref="RGD:1308679"
                     /translation="MITPGSACHPTPWSTLQLERRKGWIFLVYLRGGGSTPRPDPCSS
                     GTGPSDKTQRPAPTQSFAVLRGAVLGLQDGGEGNDAAEADPEPMEKPSGEEQPAEDQT
                     DNGQGSQSPWKQVQKRHLHLMVELLRPQDDIRLAAQLEAARPPRLRYLLVVSTGEGLS
                     EEETILLGVDFPDSSSHSCTLGLVLPLWSDTQVYLDGDGGFSVTSGGQSRIFKPVSIQ
                     TMWATLQVLHQACEVALGSGLVPGGSALAWATHYQEKLNSDQGCLNEWMAMSDLESFR
                     PPNAEPGQIATRASEQEQMEQAILAELWQVLDASDLDSVTSKEIRQALELRLGCPLQQ
                     YRDFIDNQMLLLMAQQDRASRIFPHLYLGSEWNAANLEELQRNRVSHILNMAREIDNF
                     FPERFTYHNVRVWDEESAQLLPHWKETHRFIEDARLLGLKGNGLTISHLHRAQGTRVL
                     VHCKMGVSRSAATVLAYAMKQYGWGLEQALIHVQELRPIVRPNPGFLRQLQTYQGILT
                     ASRQSHVWEQKVGVVSPEEPLAPEVSTPLPPLPPEPGGSGEGMVMGQKGSQETPKEEL
                     GLRPRINLRGVMRSISLLEPSSEPESTTEAGDLPEVFSSDEEPLHPFSQLSRAKGGQR
                     VCKGPWPALKSRQSVVALHSAALVASRARAFQGQGQGQGQEQRETGTSSTPRLRKVIR
                     QASVDDSREEGKA"
ORIGIN      
        1 taggacagga gttcctggag attctgaaat ttccctggat gataacccca ggttctgcct
       61 gccacccaac tccatggtcc acactccagc tggagagaag aaaaggctgg atcttcctag
      121 tctacctacg gggtgggggg agcaccccac gcccagatcc ctgcagctca ggcacaggac
      181 cgagtgataa gacgcagagg ccggctccaa cgcagagttt tgctgttctc cgaggggctg
      241 tcctgggact tcaggatgga ggggaaggga atgatgcagc tgaggctgac cctgagccaa
      301 tggagaagcc ctcaggtgag gagcagcccg ctgaggacca gactgacaac gggcaagggt
      361 cccagagtcc ctggaaacaa gtgcagaagc ggcacctgca ccttatggtg gagctgctga
      421 ggccacagga tgatatccgc ctggcagccc agctggaggc agcccgaccc ccaaggcttc
      481 gctatctgct ggtagtgtcc acaggagagg gtctgagtga ggaggagacc atccttcttg
      541 gggtggactt ccctgacagc agttcccaca gctgcaccct gggcctggtc ttgcccctct
      601 ggagtgatac ccaggtgtac ctggatggtg atgggggctt cagtgtgaca tctggtggtc
      661 agagccgaat cttcaagcct gtctctatcc agaccatgtg ggccacactg caggtattgc
      721 accaggcatg tgaggtggct ctaggcagtg gccttgtgcc tggtggcagt gcccttgcct
      781 gggccactca ctaccaggag aaactgaact ctgaccaggg ttgcctcaat gagtggatgg
      841 ccatgtctga cctggagtcc tttcgaccac ctaatgctga gcctggacag atcgctacca
      901 gggcttcaga acaagagcag atggaacagg caatcttggc tgaattgtgg caggtgttgg
      961 atgccagtga cctggacagt gttacgtcta aagagatccg tcaggccctg gagctgcgtc
     1021 taggatgccc tctccagcag taccgtgact ttattgacaa ccagatgctg ctgctcatgg
     1081 cccagcaaga ccgggcctcc cgcatcttcc cccacctcta cttgggttct gaatggaatg
     1141 ctgccaacct ggaggaactt cagagaaaca gggtaagtca catcctgaac atggcccggg
     1201 agattgacaa cttcttcccc gaacgattca cctatcacaa tgtacgtgtc tgggacgaag
     1261 agtcagcaca gctgctaccc cactggaagg agacacatcg attcattgag gatgccaggc
     1321 tactggggtt gaaagggaat ggactgacca tatcccacct ccatagagca cagggcactc
     1381 gggtgctagt ccactgtaag atgggcgtca gccgttctgc tgccacggta ctggcctatg
     1441 ccatgaaaca gtatggctgg ggcctcgagc aagccctgat ccacgtgcag gagctccggc
     1501 ccattgtacg ccccaaccct ggcttcctgc gccagctaca gacctaccag ggcattctga
     1561 ctgccagccg gcagagccac gtctgggagc agaaagtggg tgtggtctcc ccagaggagc
     1621 ccttggcacc tgaagtttct acaccattgc cacctcttcc accagaacca gggggcagtg
     1681 gagaggggat ggttatgggc cagaaaggaa gccaggaaac cccaaaagaa gagcttggac
     1741 tgcggccccg catcaacctc cggggggtca tgcgctccat cagtcttctg gagccctcct
     1801 cagagccaga gagtaccaca gaggctggag acctgccaga agttttctct tctgatgaag
     1861 aacctcttca tcccttctct cagctttcaa gagccaaagg tggccagcgg gtctgcaagg
     1921 gaccttggcc tgccctgaag tctcgacagt ctgtggttgc ccttcatagt gctgccctgg
     1981 tggctagcag ggcacgagcc ttccaggggc aagggcaagg gcagggccaa gagcagaggg
     2041 agactggtac atcttctaca cctaggctcc ggaaggtgat aaggcaggcc agtgtagatg
     2101 acagcaggga ggagggcaag gcctgaggcc ttatgccata tccccaccta gacactaagc
     2161 aatgattggt cactttgcat tgggcctgca cactccctat agctccttcc cagcagtcct
     2221 cagacccttg tcacttcctg caaccttagg tctcagaccc atgtctacct gttaagggct
     2281 caagactttt tctacatagg gtatgggtta gaaccattca aggtgccttt aagggtaaca
     2341 acaccctagt ttcattttac actcactctc ttaacacttt gtgcagccct ggaattaaaa
     2401 ccggaaattt ttagggtggg ttttctagtt cacatctccc ttgctctcaa ctgctggcca
     2461 ttccaccctg tgtcttttac cctctcctac cgcagtccta caggcagcta ggccagggaa
     2521 ccagtggcca caaaggcaga tagcactttc agcccccagt cccacaggct ctgagggggc
     2581 tcccaggtta ccacccaccc acacaactga ccagagtctc tgccgttgcc ctcatttctc
     2641 ccatgcccca cactgggtca cagggcactg agctaaaaag agagtcttct tgttcttgaa
     2701 gatctctggc tagtcaagtt tttcatagtc gtatagtatc tggctttgta ctgagaaata
     2761 aaagacattt tcatattaa
//
