LOCUS       XM_039085490            2785 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus slingshot protein phosphatase 3
            (Ssh3), transcript variant X1, mRNA.
ACCESSION   XM_039085490
VERSION     XM_039085490.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2785
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2785
                     /gene="Ssh3"
                     /note="slingshot protein phosphatase 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 15 ESTs, 1 long SRA read, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     8 samples with support for all annotated introns"
                     /db_xref="GeneID:365396"
                     /db_xref="RGD:1308679"
     CDS             39..2132
                     /gene="Ssh3"
                     /codon_start=1
                     /product="protein phosphatase Slingshot homolog 3 isoform
                     X1"
                     /protein_id="XP_038941418.1"
                     /db_xref="GeneID:365396"
                     /db_xref="RGD:1308679"
                     /translation="MITPGSACHPTPWSTLQLERRKGWIFLVYLRGGGSTPRPDPCSS
                     GTGPSDKTQRPAPTQSFAVLRGAVLGLQDGGEGNDAAEADPEPMEKPSGEEQPAEDQT
                     DNGQGSQSPWKQVQKRHLHLMVELLRPQDDIRLAAQLEAARPPRLRYLLVVSTGEGLS
                     EEETILLGVDFPDSSSHSCTLGLVLPLWSDTQVYLDGDGGFSVTSGGQSRIFKPVSIQ
                     TMWATLQVLHQACEVALGSGLVPGGSALAWATHYQEKLNSDQGCLNEWMAMSDLESFR
                     PPNAEPGQSVPGWGASEQEQMEQAILAELWQVLDASDLDSVTSKEIRQALELRLGCPL
                     QQYRDFIDNQMLLLMAQQDRASRIFPHLYLGSEWNAANLEELQRNRVSHILNMAREID
                     NFFPERFTYHNVRVWDEESAQLLPHWKETHRFIEDARLLGLKGNGLTISHLHRAQGTR
                     VLVHCKMGVSRSAATVLAYAMKQYGWGLEQALIHVQELRPIVRPNPGFLRQLQTYQGI
                     LTASRQSHVWEQKVGVVSPEEPLAPEVSTPLPPLPPEPGGSGEGMVMGQKGSQETPKE
                     ELGLRPRINLRGVMRSISLLEPSSEPESTTEAGDLPEVFSSDEEPLHPFSQLSRAKGG
                     QRVCKGPWPALKSRQSVVALHSAALVASRARAFQGQGQGQGQEQRETGTSSTPRLRKV
                     IRQASVDDSREEGKA"
ORIGIN      
        1 taggacagga gttcctggag attctgaaat ttccctggat gataacccca ggttctgcct
       61 gccacccaac tccatggtcc acactccagc tggagagaag aaaaggctgg atcttcctag
      121 tctacctacg gggtgggggg agcaccccac gcccagatcc ctgcagctca ggcacaggac
      181 cgagtgataa gacgcagagg ccggctccaa cgcagagttt tgctgttctc cgaggggctg
      241 tcctgggact tcaggatgga ggggaaggga atgatgcagc tgaggctgac cctgagccaa
      301 tggagaagcc ctcaggtgag gagcagcccg ctgaggacca gactgacaac gggcaagggt
      361 cccagagtcc ctggaaacaa gtgcagaagc ggcacctgca ccttatggtg gagctgctga
      421 ggccacagga tgatatccgc ctggcagccc agctggaggc agcccgaccc ccaaggcttc
      481 gctatctgct ggtagtgtcc acaggagagg gtctgagtga ggaggagacc atccttcttg
      541 gggtggactt ccctgacagc agttcccaca gctgcaccct gggcctggtc ttgcccctct
      601 ggagtgatac ccaggtgtac ctggatggtg atgggggctt cagtgtgaca tctggtggtc
      661 agagccgaat cttcaagcct gtctctatcc agaccatgtg ggccacactg caggtattgc
      721 accaggcatg tgaggtggct ctaggcagtg gccttgtgcc tggtggcagt gcccttgcct
      781 gggccactca ctaccaggag aaactgaact ctgaccaggg ttgcctcaat gagtggatgg
      841 ccatgtctga cctggagtcc tttcgaccac ctaatgctga gcctggacag tcagtgccgg
      901 ggtggggggc ttcagaacaa gagcagatgg aacaggcaat cttggctgaa ttgtggcagg
      961 tgttggatgc cagtgacctg gacagtgtta cgtctaaaga gatccgtcag gccctggagc
     1021 tgcgtctagg atgccctctc cagcagtacc gtgactttat tgacaaccag atgctgctgc
     1081 tcatggccca gcaagaccgg gcctcccgca tcttccccca cctctacttg ggttctgaat
     1141 ggaatgctgc caacctggag gaacttcaga gaaacagggt aagtcacatc ctgaacatgg
     1201 cccgggagat tgacaacttc ttccccgaac gattcaccta tcacaatgta cgtgtctggg
     1261 acgaagagtc agcacagctg ctaccccact ggaaggagac acatcgattc attgaggatg
     1321 ccaggctact ggggttgaaa gggaatggac tgaccatatc ccacctccat agagcacagg
     1381 gcactcgggt gctagtccac tgtaagatgg gcgtcagccg ttctgctgcc acggtactgg
     1441 cctatgccat gaaacagtat ggctggggcc tcgagcaagc cctgatccac gtgcaggagc
     1501 tccggcccat tgtacgcccc aaccctggct tcctgcgcca gctacagacc taccagggca
     1561 ttctgactgc cagccggcag agccacgtct gggagcagaa agtgggtgtg gtctccccag
     1621 aggagccctt ggcacctgaa gtttctacac cattgccacc tcttccacca gaaccagggg
     1681 gcagtggaga ggggatggtt atgggccaga aaggaagcca ggaaacccca aaagaagagc
     1741 ttggactgcg gccccgcatc aacctccggg gggtcatgcg ctccatcagt cttctggagc
     1801 cctcctcaga gccagagagt accacagagg ctggagacct gccagaagtt ttctcttctg
     1861 atgaagaacc tcttcatccc ttctctcagc tttcaagagc caaaggtggc cagcgggtct
     1921 gcaagggacc ttggcctgcc ctgaagtctc gacagtctgt ggttgccctt catagtgctg
     1981 ccctggtggc tagcagggca cgagccttcc aggggcaagg gcaagggcag ggccaagagc
     2041 agagggagac tggtacatct tctacaccta ggctccggaa ggtgataagg caggccagtg
     2101 tagatgacag cagggaggag ggcaaggcct gaggccttat gccatatccc cacctagaca
     2161 ctaagcaatg attggtcact ttgcattggg cctgcacact ccctatagct ccttcccagc
     2221 agtcctcaga cccttgtcac ttcctgcaac cttaggtctc agacccatgt ctacctgtta
     2281 agggctcaag actttttcta catagggtat gggttagaac cattcaaggt gcctttaagg
     2341 gtaacaacac cctagtttca ttttacactc actctcttaa cactttgtgc agccctggaa
     2401 ttaaaaccgg aaatttttag ggtgggtttt ctagttcaca tctcccttgc tctcaactgc
     2461 tggccattcc accctgtgtc ttttaccctc tcctaccgca gtcctacagg cagctaggcc
     2521 agggaaccag tggccacaaa ggcagatagc actttcagcc cccagtccca caggctctga
     2581 gggggctccc aggttaccac ccacccacac aactgaccag agtctctgcc gttgccctca
     2641 tttctcccat gccccacact gggtcacagg gcactgagct aaaaagagag tcttcttgtt
     2701 cttgaagatc tctggctagt caagtttttc atagtcgtat agtatctggc tttgtactga
     2761 gaaataaaag acattttcat attaa
//
