LOCUS       XM_039090196            8621 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus slingshot protein phosphatase 1
            (Ssh1), transcript variant X1, mRNA.
ACCESSION   XM_039090196
VERSION     XM_039090196.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 25, 2024 this sequence was replaced by
            NM_001427479.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8621
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8621
                     /gene="Ssh1"
                     /note="slingshot protein phosphatase 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 30 ESTs, 2 long SRA reads, 8 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 162 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:304580"
                     /db_xref="RGD:1306038"
     CDS             90..3212
                     /gene="Ssh1"
                     /codon_start=1
                     /product="protein phosphatase Slingshot homolog 1 isoform
                     X1"
                     /protein_id="XP_038946124.1"
                     /db_xref="GeneID:304580"
                     /db_xref="RGD:1306038"
                     /translation="MALVTLQRSPTPSAASSSASNSELEAGSDEDRKLNLSLSESFFM
                     VKGAALFLQQGNSPQGQRSLQHPHKHAGDLPQHLQVMINLLRCEDRIKLAVRLESVWT
                     DRVRYMVVVYTSGRQDTEENILLGVDFSSKESKSCTIGMVLRLWSDTKIHLDGDGGFS
                     VSTAGRMHIFKPVSVQAMWSALQVLHKACEVARRHNYFPGGVALIWATYYESCISSEQ
                     SCINEWNAMQDLESTRPDSPALFVDKPTEGERTERLIKAKLRSIMMSQDLENVTSKEI
                     RNELEKQMNCNLKEFKEFIDNEMLLILGQMDKPSLIFDHLYLGSEWNASNLEELQGSG
                     VDYILNVTREIDNFFPGLFAYHNIRVYDEETTDLLAHWNEAYQFINKAKRNHSKCLVH
                     CKMGVSRSASTVIAYAMKEFGWPLEKAFNYVKQKRSITRPNAGFMRQLSEYEGILDAS
                     KQRHNKLWRQQPADDTIAEPSEFLPETLDGALDTQLPCLEDATHPGLPRSLPSGGPSL
                     PCCFRRLSDPLLLPHRDGAGGLVHLEDLERDALLEDEAQPVEVRKLVPSSQEGDRLCE
                     KDVKRKLEFGSPKARSGSLPQVEELEKDGSPRPGRWRRASTQLERGLLDQENLNNNNS
                     KRSCPDDFERDAVFGILSKVKPPYTSCADCMYPAAGAPEAFMERHEDPSSSAICTQPT
                     FLPHVTSSPMAHTSNRSRAPERPTSGPANTSPFLLPAGSRKPDVSGSGAGVAPEPPAS
                     LPEPSRETSKALQKSLLSKNSHCDKNAANTEAAAKEELSTKKDPKPSKDLRLLFSQEG
                     EKPTANSYLMQHQESIIQLQKAGLVRKHTKELERLKSLPSDSPSTCRDSAASRLEASI
                     PEEGQEPAHPALDSQAGTEEKPVGGASQKSPPPTLLLRLDHTSKDFSKDFLKSACYTP
                     TPSSISSNLTRSSSSDSIHSVRGKPGLVKQRAQEIETRLRLAGLTVSSPLKRSHSLAK
                     LGSLNFSTEDLSSEADTSTIADSQDAKCTLSSFLPEPQAAPRNPSATSKPSGKSAPEN
                     LKIPVRVNKS"
ORIGIN      
        1 gggaagcagg aggagggagg gagcgagggg cgggcccggc gcggctgccc ggccggctgc
       61 tggaggcccg gggccgggcc agcgccgcga tggccctggt gaccctgcag cgctctccca
      121 cgcccagcgc cgcgtcgtcc tccgcaagca acagcgagtt ggaagctggc agcgatgaag
      181 accggaagtt gaacctcagc ttgagcgaga gctttttcat ggtgaaagga gcggccctct
      241 tcctacagca gggaaacagc ccgcagggcc agcggagtct tcagcaccct cacaagcatg
      301 caggtgacct gcctcagcac ctgcaagtga tgatcaacct cctgcgctgt gaagacagaa
      361 tcaaactggc cgtgcgccta gagagcgtct ggactgaccg tgtccgctac atggttgtgg
      421 tgtacaccag cgggcgccag gacaccgagg agaacatctt gctgggagtt gacttttcca
      481 gtaaggagag caaaagctgt acaatcggga tggtccttcg actgtggagc gacaccaaga
      541 tccaccttga tggggacggg gggttcagtg tgagcacggc gggcaggatg cacatattca
      601 agccggtgtc tgtccaggcc atgtggtctg ccttgcaagt gcttcacaag gcctgtgaag
      661 tggctcggag acataactac ttcccggggg gagtggcact catctgggcc acctactatg
      721 agagctgcat cagctcggag cagagctgca tcaatgaatg gaacgccatg caggacctgg
      781 agtccacgag gcccgactcc cccgcgctgt tcgtggacaa gccgacagaa ggagaaagaa
      841 ctgagcgtct cattaaagcc aaactccgga gtatcatgat gagccaggac cttgagaatg
      901 tgacttctaa ggaaatccga aatgagctgg agaagcaaat gaactgcaac ctgaaagagt
      961 tcaaggagtt catcgataac gagatgctgc tcatcttggg ccagatggac aagccctccc
     1021 ttatctttga ccatctttat cttggctccg agtggaatgc atccaatctg gaggagctgc
     1081 agggctcagg ggtcgactac attttaaatg tcactagaga aatcgacaat tttttccctg
     1141 gcctgtttgc ataccataac atccgagtat atgacgagga gaccacggac cttcttgccc
     1201 actggaatga ggcctatcag ttcataaaca aagcgaaaag gaaccattcc aagtgcctgg
     1261 tccattgcaa gatgggcgtg agccggtctg catccacggt catagcgtac gccatgaagg
     1321 agtttggctg gcccctggag aaagcgttta actatgtgaa acagaagcgc agcatcacgc
     1381 ggcccaacgc aggctttatg aggcagctgt cggagtatga aggtatcctg gatgcaagca
     1441 aacagcgaca taacaaactg tggcgccagc agccggcaga tgacaccata gcagagccca
     1501 gtgagttctt gccagagacc ttggatggcg ccctggatac tcagctgccc tgtttggaag
     1561 atgccaccca ccccgggctc ccgagaagcc tgccctcggg aggaccctct ctcccctgtt
     1621 gtttccgaag actctcggac cccctcctcc ttccccaccg tgatggtgcg ggtggcctgg
     1681 tccacttaga agaccttgag agggatgctc tgttagagga tgaggctcag ccagtggagg
     1741 tgcgcaagct ggtcccgagt tcccaggaag gtgacaggct gtgtgaaaag gatgtaaaga
     1801 ggaaactgga gtttgggagc cccaaagccc gcagcggctc cttgcctcag gtggaggagc
     1861 tggagaagga tggcagccca agaccgggga ggtggaggcg ggcctccacg cagctggaga
     1921 gaggtttgct tgaccaggaa aacctaaata acaacaacag caagaggagc tgtcccgatg
     1981 actttgagcg tgatgcggtg tttgggatcc tcagcaaagt gaagcctccc tatacatcct
     2041 gtgccgactg catgtaccca gcagctgggg ctcctgaggc cttcatggag cggcatgaag
     2101 accccagctc ctctgccatc tgcacccagc cgaccttcct cccccacgtc acgtcttccc
     2161 caatggccca cacgagcaat aggtcccgag ctccggagag gccaacctca ggtccagcta
     2221 acacctctcc attcctacta ccagcgggct ccaggaagcc agatgtcagt ggttctggag
     2281 ccggggttgc cccggaacca ccagcaagcc ttccagagcc ttccagagag acctcgaaag
     2341 cccttcagaa atctctcctg tcgaagaatt cccactgtga taagaacgca gccaatacgg
     2401 aggcggcggc aaaggaagaa ctgtcgacca agaaagatcc gaagccctca aaggacctga
     2461 ggctcctgtt cagtcaagag ggggagaagc cgaccgccaa tagctacctg atgcaacatc
     2521 aggagtccat tatccagttg cagaaggcag gcctggtccg aaagcacacc aaagagctgg
     2581 agaggttgaa gagcctgcct tcagactcac catctacttg ccgggacagt gccgccagca
     2641 ggctggaggc cagcatcccc gaggagggtc aggagcctgc acacccagcc ctagacagcc
     2701 aagctggaac tgaagagaag cctgtgggcg gagcctcaca gaagagccct ccgcctaccc
     2761 tcctcctccg cctagatcac accagtaaag acttctctaa agacttcctg aagtccgcgt
     2821 gctacactcc caccccctcc tccatcagct ccaacctgac ccggagctcc agcagcgaca
     2881 gcatccacag tgtccgaggg aagccagggc tggtgaagca gcgggcgcag gagatcgaga
     2941 cgcggctccg cctggccggt ctcactgtgt cctccccact gaaacgttcc cattccctcg
     3001 ccaagctggg aagtctcaac ttctccacgg aggacctgtc cagtgaggct gacacgtcaa
     3061 ccatcgccga ctcacaggat gccaagtgca ctctctcttc cttcttgccc gaaccccagg
     3121 ccgcacctag gaacccctct gcgacctcca aaccatcagg gaaatccgcc ccagagaact
     3181 tgaaaatccc agtgagggtg aacaaaagct gactagcttc cagctctgcg aggtcttcat
     3241 aatgtcttga tccgctctcg tgtcttgatt tgtgttaacg acttcagcct tctgagcttt
     3301 ccccacctag agcctgtgag ggggaacacc caggggtggg gcctgggcaa cccgggaact
     3361 gtcagcccgg agtaccgttc agatgcatac acacaggctg gggctttgtc tcagttgttg
     3421 agagtgtgta cctgacacgc gccaagccct cggtttgatt ccccagcagc ccataaaacc
     3481 agacaaggct gcatacaccc acatcccaac actggaggtg gaagcagaag gattagaagt
     3541 tcaaagtcat cttcagctac ttggtgagtt ttaggccagc ctggcagaga gagtgagaga
     3601 aaaaaaaaac aaaaaaaact atgtgtgtac atacaaaata ctcagtttgc aacgagtaaa
     3661 ggagccacag tggtgaggtc cccgctgccc atgttcccgg ctcaatccgg tcctcgaggg
     3721 agaatcctcc gaggacaaca caaggcctac ctctccgctc actgtgcatt tcatttataa
     3781 aatagtaatg accgaggctc gatccgagga acaatgctgt gtccagaagg gtttttccaa
     3841 gagaattgtg gggggttttg ggtttggttt gttttattct tttgagggtg gtgacccgca
     3901 gaagcatcaa gactttgaac ctgactatcc caagaacagt gaggcaatat catcagagga
     3961 aggcacttag tggcagcgcc cgtttaacag tcctggtgcc catgggcgga ggcagggggg
     4021 tcctcagctg ctggcttcaa gcttacgtca cccaatcaca gagaagggca ctgctgaagg
     4081 gcactgctga gccttgtctg ctgctaacaa ggcatcctgt ttggaattca gaccacctcc
     4141 ggacctcagg acatgaggtc gtggatctgg gatgtggttc atcccgctga gacactgtga
     4201 cccccacccc caaccccacc cccacttcca cccaaggctc tcattcagtg ccatctccac
     4261 atttgttgaa aggaaaggca ggtcagcaac gggtactttc ttacaagctg ctccccagga
     4321 gtcactctga gaggagagag tctgttaaaa aaagcttcac agatgtttat gaagtgtccc
     4381 ttctcatggg gagaatagaa tactgcttcc ttgtctccag cttgccatgc tgtaacgatg
     4441 gggcagagga ggcttggcca cagcacaggt atgagtgcag gttagctcaa tgaagcaggg
     4501 ggcctgggtt ctgtgttcaa atcatgggcc tctcctggtg cccatcgtga aaagggacaa
     4561 gcagcgaggc cgaccgacca gcagaaagcc ttgacttggt gttcggcaaa tggtggcgca
     4621 cagccctgtg acatcacctg ggctctgttg gtggttttgg gttttggttt ggtttggtgt
     4681 tttgagatag ggtttctctg tagaccaggc tggcctcaaa ctcagagatc tgcctgcctc
     4741 tacctcccta gtgctgggat taacagtgtg tgcgaacact ggctggctgg ctgccttcct
     4801 tccttccttc ccttcttcct tttcttcctc ttcttcttct tcctcttccc ttccttcctt
     4861 ccttccttcc ttccttcctt ccttccttcc ttccttctta atttgagaca aggtctctct
     4921 gcagtaccct ctgctgcctt ggaactttct ctggagaccc ggtaggcctc gaactcagca
     4981 gagacccatc tgcctctgcc tctcaagggt ttggcttttg tttttatttt tgaggtagcc
     5041 tctcaccctg tagttcaagc tggcctcaaa ctcacagcaa tcctcctgcc tcagcctccc
     5101 aaatgctggt ttgatcacag gtgtcatccc ttcgtgcccc caggcttagt tgtaacattt
     5161 ttaagggtaa acggtctaga cttgtgatcc taccctcagg aggccgaggc aggtccatcg
     5221 tgagttaaag ggcagtcggg gccacagagt gcgattctac ctcagaagtg gtaaataacc
     5281 ttgccaccag aagatggcat tacctgcttc agatgtcttc tctgcgagcc ccggtagaaa
     5341 gcttgctgac tgtttttttg cgatgcccca gggctgcttg taacatggca ggaagacagg
     5401 ggacatattt gaaggctgcc tttgctcctt ggatatctca gaccaaaccc ttcccgccta
     5461 cacttcagac ttgccagctg tccttttacc tcttgagcag acggagtcct tgtggaggtg
     5521 accacagctc catcctgcgg ttggctggtt cagccagaca gttccgtgag accacaacat
     5581 ctttaaggat acggtgtgtt ctggaagtac acggatgggg gcctccaccg cactggttag
     5641 aacggagtct caaaacggcc atcctggtga acgcccaagt gtctctagga tctaggccag
     5701 ttctcttttc attcctctgg gggtctttgt gagctctgtc tcagaactct tctacctggc
     5761 gtgacttttt tttttttttt aatacatgtg cgttatttta cagggcttta ttttcccact
     5821 actgtcaatg gcagtcacct taaaaagcga tcatccactt tttcctgaaa ccctgtgggt
     5881 ttcttctatt ctcccctcgg ccaacaaaag caaaaaaaaa aaaaaaaaag gccaagttaa
     5941 tatatgtcgc caagttcaat ttcacatggt gggtcaattt ttgtgtcaaa ataattccct
     6001 agatttggta atgataggct tccgctgcgt tttttaatcc catctgtaag agcggcagga
     6061 tttttgaaaa ccctcatttt gaaaagccgt aatttctgtt caaagagtca ggacaggagg
     6121 agggcaaact ggaggaggtc tctggatgct ggcagactgc ctgcacctgt cttagaagaa
     6181 ctggcgcacc cagcaacctc cccatcctta gaaccgaatc cctggagtca tggtttccac
     6241 tcctcctgga aggttggctc tgtctgtcaa cacggatcgg cctttaacca gaaaggcttc
     6301 cgtgaaacta tcccctcgct aagctaaggc gtacctcagc agcggcatca gctcccgtat
     6361 tgtctcagga aaagtttgtt ccagccaggc tcggttggtc gcatacactt gtgatgggga
     6421 ggccattgga tccctgggtt caaggctgtg tagaaccttg acctccaccc cccacccctc
     6481 ccccgaaaat gttagctctg tgagctgctc tatgcctggc tagtttagct gtgtgtgtgt
     6541 gtaaccttag caaacaaagg tacagggact taggcagcgt tgagccacca gtttcgatgg
     6601 ctgccaattt caccgaatgt ccttgttgaa agaagagcct tctgctctga ttgatggtcc
     6661 gggaacttgg ctgctcttcc tcgctctcac tcgcctgcac ttccatagct tcccaaaagc
     6721 ctgagccatg tggtggcctt gtatgtccac acagaaggct tcctgacgtg taagggagat
     6781 gggtactggg caggggggtg gggtgggggg agtctggatg cccgattgcg tgaactaaga
     6841 gcaaggtgtc tttctcaaat cccccacccc tcgttctcag tacggaagcc ctgctggcca
     6901 catgcagttc atccccgtgg ctctcacggg ttcccagatg gctgcactgc tctgctccca
     6961 ttgctatagc tgaagatccg acccagcatc ctctgcccga gaaaagcccg gagggtgcct
     7021 caggatggaa ccaagagaga ttagatgttg acagccgccc tgtacttttg ggcaccaatc
     7081 tcagggacca ccccggaagg ctctcgaatc tcctgctctt cggggaccat ttctccttag
     7141 caaggacgag aacacaagag acatcacaca tcaccgcccc ttaaaagagt taccttctac
     7201 acgctggcag ttactggtgt gagaattcat ttccaacccc agtgggttgg ctgatgctca
     7261 gcggcacacc taacgaatgc cttcagggta acccgtgtac ctagggtccc ttgcccgacc
     7321 ctagctgtgc aatccagcag gaccagggag actctcgctc ttccccacat tggttgcaat
     7381 gtcactgctg atgagggaaa ctctccttcc caccctaaag gctaggttcc tgctgaccgt
     7441 aagggcagat gaaggtcatt ggtgttcccc tacccaaagc cccttggttt tgttactatg
     7501 gaggtgtgag agtccactgt gtatggacat atgcatataa gtatttgcat atgcgctgtg
     7561 tgtatgtgcg tatgccttgt gtatgcatta tacatactat acttaaaagt gtattctact
     7621 cgatcaaacc tggtgtatgc tgttcctcac acactgtggg tcctccagct ttgcagggaa
     7681 gtcgccctgg acccatctgc agtgctgcca ccaggggcca tctggagaag ggttgactac
     7741 cccgttccct tttgcagtag acaccacagt ccctccttca gtccctgtct tagacacaca
     7801 gcctctgccg ccctggcccc ttggcctcgc tgcatgagaa gacagctgct tcctcctcta
     7861 ccccgtaatt attcttttac aactgagtgc cttaataatc gtttacaaat actgtgtatt
     7921 tatgcgcagc cgttcagctc tcatctttcg tggctgggta cttcggtccc ggtggttaag
     7981 attagcacct gagctcgtcc ctacccccca tccacgtgtg tcactctgct atgcagttga
     8041 catcctgggt cctgactact ccacccagcc tgctgaatcc ccacaggcta tgcggacatc
     8101 ggcaaacccc gaaaacctga ggtaggtagt gaaggacgag atttggtttg ccaggcagcc
     8161 gagaggtggt gcaggcccag cgttccctga accacagccc aagaccacac cacctgaacc
     8221 tctcaaggtc gccctctagt ttacagaggc ttgccaacgc ctaccctcca ccccttcaca
     8281 ctccctcctc ttctgcctgt gtcctgagct ccttgctaca tgggtacagc tcactccaga
     8341 ggaggagtgg caccagaccg catccttcac ctttcaaacg cccgcagcca ccaccgtgcc
     8401 ggattccttc gtcacattac aacttcgatg gttttttttt tttattgtat tgtttttctt
     8461 gttttttata ttatatattt aagaggcagt atcttttgta ctgtgaattt tcagtagaag
     8521 aggcatagtg cacttttttt tttttacttc tgttggtgtg tactgtacat aatagtctgc
     8581 gtgcttctcg tgatgagaat aaacacttcc tttatacatg t
//
