LOCUS       NM_001134545            4495 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus scavenger receptor cysteine rich family member
            with 5 domains (Ssc5d), mRNA.
ACCESSION   NM_001134545 XM_001072080 XM_218203
VERSION     NM_001134545.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4495)
  AUTHORS   Abonnenc M, Nabeebaccus AA, Mayr U, Barallobre-Barreiro J, Dong X,
            Cuello F, Sur S, Drozdov I, Langley SR, Lu R, Stathopoulou K,
            Didangelos A, Yin X, Zimmermann WH, Shah AM, Zampetaki A and Mayr
            M.
  TITLE     Extracellular matrix secretion by cardiac fibroblasts: role of
            microRNA-29b and microRNA-30c
  JOURNAL   Circ Res 113 (10), 1138-1147 (2013)
   PUBMED   24006456
REFERENCE   2  (bases 1 to 4495)
  AUTHORS   Miro-Julia C, Rosello S, Martinez VG, Fink DR, Escoda-Ferran C,
            Padilla O, Vazquez-Echeverria C, Espinal-Marin P, Pujades C,
            Garcia-Pardo A, Vila J, Serra-Pages C, Holmskov U, Yelamos J and
            Lozano F.
  TITLE     Molecular and functional characterization of mouse S5D-SRCRB: a new
            group B member of the scavenger receptor cysteine-rich superfamily
  JOURNAL   J Immunol 186 (4), 2344-2354 (2011)
   PUBMED   21217009
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474075.1.
            
            On or before Sep 4, 2008 this sequence version replaced
            XM_218203.4, XM_001072080.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4495
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q12"
     gene            1..4495
                     /gene="Ssc5d"
                     /gene_synonym="RGD1565772"
                     /note="scavenger receptor cysteine rich family member with
                     5 domains"
                     /db_xref="GeneID:308341"
                     /db_xref="RGD:1565772"
     exon            1..148
                     /gene="Ssc5d"
                     /gene_synonym="RGD1565772"
                     /inference="alignment:Splign:2.1.0"
     CDS             124..4434
                     /gene="Ssc5d"
                     /gene_synonym="RGD1565772"
                     /note="soluble scavenger receptor cysteine-rich
                     domain-containing protein SSC5D; scavenger receptor
                     cysteine rich domain containing (5 domains); scavenger
                     receptor cysteine rich family, 5 domains"
                     /codon_start=1
                     /product="soluble scavenger receptor cysteine-rich
                     domain-containing protein SSC5D precursor"
                     /protein_id="NP_001128017.1"
                     /db_xref="GeneID:308341"
                     /db_xref="RGD:1565772"
                     /translation="MRVLACLLAMLVGIQAIERLRLADGPHGCAGRLEVWYSGRWGTV
                     CDDGWDLRDAAVACRVLGCGGALAAPGGAFFGEGTGPVWLSELACRGSEGQLGICPHR
                     GWKAHICSHEEDAGVVCVGQRAANSREDSVSLLDGDPWLALSGELSPSSEEPPITHAP
                     QPAASSQNGPRKKNPRPPKQVKSTRAPVLTNGAPRQERLRLVSGPHGCAGRLEVWHGG
                     RWGTVCDDGWDLRDAAVACRELGCGGALAAPGGARFGPGEGPVWMDDVGCGGGEEALR
                     DCPRSPWGRSNCDHTEDAGLVCTGPAPRLRLADGPHGCAGRLEVWHGGRWGSVCDDAW
                     DLRDAAVACRELGCGGALAAPGGAFFGEGAGPIILDDLRCRGNETALRFCPARPWGQH
                     DCHHREDAGAVCDGMPLGGDVQPTAPAVDSNRTTPRLQSTSVGHTPGPAGSWPPPASP
                     TAPPEPGPEAGSPQLRLVAGPSRCSGRLEVWHDGRWGTVCDDSWDMRDSAVVCRELGC
                     GGPRQPDPAAGRFGWGAGPIWLDDVGCVGTEASLSECPAASWGKHNCAHNEDVGVTCT
                     GTPGLDTISDPFSWSWLPGLGRDQDAWLPGELATKPSASLTSSVLQKTTKAPGKVPKS
                     TKKWVTKNAKRPTTQPPGIPITKRPRVPGTPTSLSPTPRTSELPKRLTAEAPRRQTSH
                     TTERLTPRVPWEWTSETAASLSTQGPQEVTSEATTAQTPQTSLEPFGENPEGSLESSQ
                     DPAATPTAGVPVPSGPFRVRLADGPNRCAGRLEVWHAGLWGTVCDDSWDLRDATVACW
                     ELGCGKVRPRVGKTHYGPGTGPIWLDDMGCKGSETSLSDCPSGTWGKHNCDHEEDVVL
                     TCTGYTGDDDYPSWTWDPTSEEDLTKRTTVATQPGHTPSWATTTNPEVLSPATQSLPD
                     IDDQGSYELSWTWDTPSGRSLSKGTPTTTKPGSTVTTSTRKSPGHPFPAPRARANTGL
                     PRKPKPERRTLQPTSARTTHTTSSPASYTSPEPSGSQQTSGSWPQLFPDLASKQEGTS
                     TPPKTSPLTPGLPSPTNFALSTTDASLLPTRPPELSGSPTSNSPEGLTSDSPMLLEVS
                     SLSPTSELTPGSDMTPDLGTAPKIIPESSESSDLPTSPSTHTQPFTASYPTSIPHPTT
                     IPHPTTTPHPRAPSHPTTIPQLNTTSYPTMALQPTTNPQHPGSPHPTTSPQPPTNTHS
                     SSTSATPTKSLPSSPETEFSSPTPQPRVKPSLHPDLTFVGVPPTGKSQMQNLEFSLAS
                     ESGPSRPSPAPSMDPLSTEVFKPPRSQTLHSVSEPMVTADLAISSMAHPSDQPPPDRL
                     AQGPTSNHNPGPFGPCVSSVPPVRVMACEPPALVELVAAVREVGDQLQRLTRVLEQDR
                     QERQVLGLGLVKLVEAAQGLGQLSETVKRLAEVAWPPSTPVPTTTTTEEEERPLRGDV
                     "
     exon            149..175
                     /gene="Ssc5d"
                     /gene_synonym="RGD1565772"
                     /inference="alignment:Splign:2.1.0"
     exon            176..484
                     /gene="Ssc5d"
                     /gene_synonym="RGD1565772"
                     /inference="alignment:Splign:2.1.0"
     exon            485..598
                     /gene="Ssc5d"
                     /gene_synonym="RGD1565772"
                     /inference="alignment:Splign:2.1.0"
     exon            599..712
                     /gene="Ssc5d"
                     /gene_synonym="RGD1565772"
                     /inference="alignment:Splign:2.1.0"
     exon            713..1021
                     /gene="Ssc5d"
                     /gene_synonym="RGD1565772"
                     /inference="alignment:Splign:2.1.0"
     exon            1022..1339
                     /gene="Ssc5d"
                     /gene_synonym="RGD1565772"
                     /inference="alignment:Splign:2.1.0"
     exon            1340..1504
                     /gene="Ssc5d"
                     /gene_synonym="RGD1565772"
                     /inference="alignment:Splign:2.1.0"
     exon            1505..1822
                     /gene="Ssc5d"
                     /gene_synonym="RGD1565772"
                     /inference="alignment:Splign:2.1.0"
     exon            1823..2386
                     /gene="Ssc5d"
                     /gene_synonym="RGD1565772"
                     /inference="alignment:Splign:2.1.0"
     exon            2387..2701
                     /gene="Ssc5d"
                     /gene_synonym="RGD1565772"
                     /inference="alignment:Splign:2.1.0"
     exon            2702..2869
                     /gene="Ssc5d"
                     /gene_synonym="RGD1565772"
                     /inference="alignment:Splign:2.1.0"
     exon            2870..3034
                     /gene="Ssc5d"
                     /gene_synonym="RGD1565772"
                     /inference="alignment:Splign:2.1.0"
     exon            3035..4495
                     /gene="Ssc5d"
                     /gene_synonym="RGD1565772"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cctagctgtc cagggcgcct cagcagcggc ttccctccct cctatcctcc ctggctgcct
       61 ccgcctcccc tctcctgccc tctttcccct ttcaccccat cccctgccct ggactctgca
      121 aacatgaggg tcttggcgtg tcttcttgca atgctggtgg ggatccaggc tatagagcga
      181 ctccgcctgg ctgatggccc tcatggctgt gcaggacgcc tggaggtctg gtacagcggg
      241 cgctggggca ccgtgtgtga tgacggatgg gaccttcggg atgctgcagt ggcctgccgt
      301 gtgttgggct gcggaggggc gctagccgcc cccgggggtg ccttctttgg ggagggcact
      361 gggcccgtgt ggctcagtga gctggcctgt cggggcagtg agggacagct gggtatctgt
      421 ccccaccggg gctggaaggc tcatatctgc tctcacgagg aggacgcggg cgtcgtctgt
      481 gtaggtcagc gtgcagctaa ctctagagaa gactcagtgt ccctgctgga tggggaccca
      541 tggctggcac tgtctgggga gctgagcccc agctcagagg agccccctat aactcatgct
      601 ccccagccgg cagcaagctc ccagaatggc ccccgaaaga agaacccccg gccacccaag
      661 caggtcaagt ccacccgagc ccctgtactg acaaatggag ctccccgcca agagcggctg
      721 cgtctggtct caggtcccca tggatgtgcc ggccgcctgg aagtctggca cggtggacgt
      781 tggggtactg tctgcgatga tggatgggac ctccgagacg cagcagtggc ctgtagggag
      841 ctaggatgtg ggggagcgct ggccgcccct ggaggtgcca gattcggacc tggtgaggga
      901 cccgtgtgga tggacgatgt cgggtgtgga ggaggagagg aggccctccg ggactgtccc
      961 cgaagcccct ggggccggag caactgtgac cacacagagg atgcagggct ggtctgtact
     1021 ggtcctgcac ccaggttgcg ccttgctgat ggtccccacg gctgtgctgg gcgcctggag
     1081 gtttggcatg gtggccgctg ggggtcggta tgtgacgatg cttgggatct tcgtgatgcc
     1141 gctgtggcct gcagggagct gggctgtggg ggtgccctgg ctgccccagg gggtgccttc
     1201 tttggtgagg gggctggacc catcatcctg gatgacctca gatgtcgagg aaacgagaca
     1261 gccttacgat tctgccctgc gaggccctgg ggtcagcatg actgtcacca tcgggaggat
     1321 gctggggctg tgtgtgatgg catgcctctc ggtggcgatg tgcagcctac agctcctgca
     1381 gtggacagca acagaacaac acccaggctc cagtctacct cagtgggtca tacgccaggc
     1441 ccagcaggca gttggcctcc tcctgcttct cctactgccc ctccagagcc tggacctgaa
     1501 gctgggtccc cccagttgcg cctggtggct ggacccagca ggtgctctgg tcggctggag
     1561 gtatggcatg atggacgctg ggggacagta tgtgatgaca gctgggacat gagagactca
     1621 gctgtggtct gccgggagct gggctgtggg gggccccgac agccagaccc tgcagcaggc
     1681 cgctttggct ggggcgcagg ccccatctgg ctggatgatg taggttgtgt ggggacggag
     1741 gcttcactgt cagaatgccc tgctgcttcc tgggggaaac acaattgcgc ccacaatgag
     1801 gatgtcgggg ttacctgcac cgggaccccc ggcctggaca ccatctcaga ccctttcagt
     1861 tggagctggc tccctgggct gggtagagat caggatgcct ggctcccagg agagctggcc
     1921 accaagcctt ctgccagtct cacctccagt gtgctacaga aaaccacaaa ggctccaggg
     1981 aaagtgccca agagtaccaa gaagtgggtg actaaaaatg caaagagacc aaccactcag
     2041 ccccctggga taccaatcac taaacgcccc agggtcccag gcaccccaac ctccctaagc
     2101 ccaaccccac gtacctctga gttaccaaag agacttactg ccgaggctcc tcgcagacag
     2161 acctcacaca ccaccgaaag gctgacccct agggtcccct gggagtggac ctcagagacc
     2221 gcggcatcac tgtccactca aggcccccaa gaagtgacct ctgaggccac caccgcacaa
     2281 acccctcaga cctccttgga gccatttggt gagaacccag aaggctctct agaatcttcc
     2341 caggatccag ctgccacccc gactgctgga gttcccgtgc catcgggtcc cttccgggtt
     2401 cgtctggctg atgggcccaa caggtgtgct ggccggctag aggtgtggca tgccgggctc
     2461 tgggggacag tctgtgatga cagctgggac ctccgggatg ccacagtggc ctgctgggaa
     2521 ctgggttgcg gaaaggtccg gccccgagta ggcaaaaccc actatggccc tggcactggg
     2581 cccatctggt tggatgacat gggctgtaag ggaagtgaga cgtcactgag tgactgcccc
     2641 tcggggacat gggggaagca caactgtgac cacgaagaag acgtggtgct cacctgcact
     2701 ggctacacag gggatgacga ttacccttcc tggacctggg accccacttc ggaagaggac
     2761 ctgaccaaaa ggaccacagt ggccacacag cctggacata caccttcctg ggctactacc
     2821 acaaaccctg aagttctctc tccagcaacg cagagccttc cagacataga tgaccagggt
     2881 agttatgagc tctcctggac atgggataca ccttcaggaa ggagtctgtc caaagggacc
     2941 cccaccacaa ccaaacctgg atccacagtt accactagca ccagaaagag tccaggccat
     3001 ccctttccag ctccaagggc ccgtgcaaac acaggtttac caaggaagcc aaaacctgag
     3061 cgccggacgc tgcagcccac ctcagccagg acgacacaca ccacctcatc cccggcttcc
     3121 tacacctcac cagagccttc tggctcacag cagacctctg gctcctggcc acaactcttc
     3181 ccagacttgg cttcaaagca ggaggggacg tctacccctc ccaaaacatc tccactcacc
     3241 ccaggacttc cctccccaac aaactttgcc ttgtccacta ctgatgccag tttgcttcca
     3301 acacgtcccc cagagctttc aggcagccca acatccaact cccctgaagg gctaacctct
     3361 gactccccca tgctattaga agtgagcagc ctttccccta cctcagagct gacgccagga
     3421 tctgacatga caccagacct gggcacagca cccaaaataa tcccagaaag ttctgagtcc
     3481 tcagacctcc ccacgagccc cagcacccac acacaaccat tcacagcctc ttaccctacc
     3541 agcatccctc accccaccac catccctcat cccaccacta cccctcatcc tagagccccc
     3601 tcccacccca ccaccatccc tcaactcaac acaacttcct accccaccat ggccctgcaa
     3661 cctaccacca accctcagca tcccgggagc cctcatccca ccacaagtcc tcaacctccc
     3721 accaacactc actcttcttc aacctctgcc acccccacaa agtcccttcc atcctcccca
     3781 gagacagaat tttcctctcc tactccacaa ccaagggtca agcctagcct acacccagat
     3841 ctgacctttg taggagtccc gcccacaggc aaatcccaga tgcagaacct agagttctct
     3901 ctagcctcag agtctggccc ctccaggccc tctccagccc caagcatgga cccactatcc
     3961 acagaggtct tcaaaccacc cagaagccag accttacact cagtttcaga acccatggtg
     4021 accgctgacc ttgccatctc ctctatggcc cacccatctg accaacctcc cccagatcgc
     4081 ctcgctcaag ggccaacttc taatcacaac ccaggtccct ttgggccatg tgtctcctca
     4141 gtaccacctg taagggtcat ggcttgtgag ccacctgcct tggtggagct ggtggctgct
     4201 gtgagggagg tgggtgacca gctgcagagg ctgacccggg tcctggagca ggaccggcag
     4261 gagcgccaag tcctggggct gggcctagtc aagttggtag aggctgccca ggggttgggg
     4321 cagctaagtg agactgtaaa gaggcttgca gaggtggcct ggccccccag cacacctgtg
     4381 cccacaacca ccaccacaga ggaggaggag aggcctctga gaggagatgt gtgacccatt
     4441 ctgaagttcc aagtgcttaa gatactctca aagaaacaaa agccaaagta tctac
//
