LOCUS       XM_039090072            2810 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus scavenger receptor cysteine rich
            family member with 4 domains (Ssc4d), transcript variant X1, mRNA.
ACCESSION   XM_039090072
VERSION     XM_039090072.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039090072.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2810
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2810
                     /gene="Ssc4d"
                     /note="scavenger receptor cysteine rich family member with
                     4 domains; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 ESTs, 3 long SRA reads, 3
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:304401"
                     /db_xref="RGD:1306970"
     CDS             379..2139
                     /gene="Ssc4d"
                     /codon_start=1
                     /product="scavenger receptor cysteine-rich
                     domain-containing group B protein isoform X1"
                     /protein_id="XP_038946000.1"
                     /db_xref="GeneID:304401"
                     /db_xref="RGD:1306970"
                     /translation="MGPPERPSLGWTPKEADMQSGPQPDEWSSGWKPGDGGAAPLPLS
                     PALSFLLLFPLASALQPTPLPFPELRLVGGPSRCRGRLEVMHSGSWGSVCDDDWDVVD
                     ANVVCRQLGCGLALPVPRPLTFGQGRGPIFLDNVECRGQEASLSECGSRGWGVHNCFH
                     YEDVAVLCDEFLHTQPPARKVLTSIAPPTALQNGRGEGSVRLAGGASPCQGRVEILHG
                     GLWGTVCDDDWGLPDAAVVCRQLGCGAALAATTNAFFGYGTGHILLDNVHCEGGEPRL
                     AACQSLGWGVHNCGHHEDAGVLCAVLSPPTSTALPPSVTKEDWAWHTEPAATGVGALP
                     SRDTIRFTTAAWASGKKSGRLRLVGGPSPCRGRVEVLYAGGWGTVCDDDWDFADARVA
                     CREAGCGPALGATGLGHFGYGRGPVLLDNVGCTGTEARLSDCFHLGWGQHNCGHHEDA
                     GALCAGPEELGLQVQQDGSETTRMPSPRPRDGHLRLASGTHRCEGRVELFLGQQWGTV
                     CDDAWDLRAAIVLCRQLGCGQALAALGEAHFGPGRGPILLDNVKCRGDESTLLLCSHI
                     RWDVHNCDHSEDASVLCQPL"
ORIGIN      
        1 cgggctgctc acagcactac agatcacctc cactctccct tagcctctct ctgcgccaaa
       61 ggtcaggtgg ggacaggctg gggccaccag cagctccatg gccaaggcta ttgcctcttc
      121 tctccttcca gctacggaaa gaaaagacga aaagtctgtg ttgatctgca tttggggggc
      181 ccttccccct ccgaaagttc cagtggttga aacttggatt atctggagac gaagggacag
      241 aaagacccca gaacatcccc acagctctcg cacctgtggc tatgtccttc cccctgcagc
      301 tggcccgtgc gtctggaagt aagcacggag gatcctgagc tgcagatgtt ccagctgtga
      361 cttctcctcc gatacctgat gggaccgcct gaaaggccat cccttggctg gacacccaag
      421 gaagcagaca tgcaaagtgg cccccagccc gatgaatgga gcagtggatg gaagcctggg
      481 gatgggggtg ctgccccctt gcccctctcc ccagcactgt ccttccttct tctgttccca
      541 ctggcgagtg ccctccagcc cactcctctg ccctttccag agctgaggct ggtagggggt
      601 ccaagccgct gccgagggcg cctggaggtc atgcacagcg gttcctgggg cagcgtttgc
      661 gacgatgact gggacgttgt ggatgccaac gtggtgtgtc gtcagctggg ctgtggcctg
      721 gcattgccgg tgccgcggcc cctcaccttt ggccagggca gagggcccat tttcctggat
      781 aatgtggaat gccgcgggca ggaagcgtct ctgagcgagt gtggcagcag gggctggggt
      841 gtccacaact gctttcacta tgaagatgtg gcggtcctgt gtgatgaatt cttgcataca
      901 cagcccccag caaggaaggt gttgaccagt atagcgcccc ctacagccct ccaaaatggg
      961 agaggtgagg gcagcgtgcg cctggcgggc ggtgccagcc cgtgtcaagg ccgagtggag
     1021 attctgcacg gtggcctctg gggcactgta tgcgacgatg actgggggct gccggatgct
     1081 gctgttgtgt gccgccagct gggctgtggg gccgccttgg ctgccaccac taacgccttt
     1141 ttcggctacg gtaccgggca tatcctgctg gacaacgttc actgcgaagg cggggagccc
     1201 cgcctggcag cctgccagag cctaggctgg ggcgtgcaca actgcggaca ccacgaggat
     1261 gctggggtgc tctgtgcagt tctgagccct ccaacttcca cagcactgcc tccctctgtc
     1321 accaaagaag actgggcatg gcacactgag ccagcagcta caggagttgg tgccctgcct
     1381 tccagggata ccatacggtt caccacggca gcctgggcct cagggaagaa aagcggtagg
     1441 ctgaggctag taggcggccc cagcccttgt cgcggtcgcg tggaggtgct gtacgccgga
     1501 ggttggggca ccgtgtgcga cgatgactgg gacttcgcgg acgcgcgcgt ggcctgtcgc
     1561 gaggcgggtt gtgggcctgc gctaggcgcc acgggccttg gtcattttgg ctatggccga
     1621 ggccctgtgc tgctggacaa cgtaggctgc accggtaccg aagcccgcct cagcgactgc
     1681 ttccatctgg gctggggcca gcacaattgc ggccaccacg aagacgctgg agctttgtgc
     1741 gcaggcccag aggagctggg actccaggtc cagcaggatg gttctgagac cacccgaatg
     1801 cccagtcctc ggcccagaga tgggcacctc cgtctggcta gtggaaccca ccgatgtgaa
     1861 gggcgtgtag aactcttcct gggacagcag tggggcactg tttgtgatga cgcctgggac
     1921 ctacgggcag ccattgtcct gtgccgtcag ctgggatgtg gccaggctct ggcagcccta
     1981 ggcgaggccc actttggccc aggccgaggc ccaatcctct tggacaatgt caaatgccga
     2041 ggagacgaga gcaccttgct actttgctct cacatccgct gggatgtcca caactgtgac
     2101 cacagcgagg atgccagtgt cctctgccag ccattgtgac ccagacagct ctgcactccg
     2161 tatcatgtca aaggagccta tgggaaactg cctctgcttt tccaggatgc tttcctatga
     2221 tagctccagg tcctggtgcc ctttctcccc atgcatgggg gagaaatgaa gtacctgcct
     2281 gcatcctctt tactgtgtgg cctgagactg ttgtcagctg ctgaaggccc agtacagtga
     2341 acacagcaat gttttgcctc agtcagaaca gaaaatgtgg gagaatgact cacttctctt
     2401 tgggggaact cttattatat agtacccctg atctttcctc tctccaccca tagccatgag
     2461 gctctctgta aaggccttca aaccttccag tgacctatct tggtctcccc ctaaaagtgg
     2521 ggagacagga ggggttgggg gtgctctttt ttatagactg gcaggggact gcagaagatc
     2581 ccaggtcatc accttccctg ctgggtgagg acctggactc agatggtgct cagctgaaca
     2641 agggggctgc aggggccaaa gcagggacaa aaggagccct tcctgcagca actctgatta
     2701 ccactccccc cgccacagag cctccacttt gcagtagcaa agaagcctgg aggcccatag
     2761 ccactgttca taggtgccaa gtcaataaag cactatcccc catcttttaa
//
