LOCUS       NM_053358               1916 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus single stranded DNA binding protein 3 (Ssbp3),
            mRNA.
ACCESSION   NM_053358
VERSION     NM_053358.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1916)
  AUTHORS   Costello,I., Nowotschin,S., Sun,X., Mould,A.W., Hadjantonakis,A.K.,
            Bikoff,E.K. and Robertson,E.J.
  TITLE     Lhx1 functions together with Otx2, Foxa2, and Ldb1 to govern
            anterior mesendoderm, node, and midline development
  JOURNAL   Genes Dev 29 (20), 2108-2122 (2015)
   PUBMED   26494787
REFERENCE   2  (bases 1 to 1916)
  AUTHORS   Nagamachi,A., Matsui,H., Asou,H., Ozaki,Y., Aki,D., Kanai,A.,
            Takubo,K., Suda,T., Nakamura,T., Wolff,L., Honda,H. and Inaba,T.
  TITLE     Haploinsufficiency of SAMD9L, an endosome fusion facilitator,
            causes myeloid malignancies in mice mimicking human diseases with
            monosomy 7
  JOURNAL   Cancer Cell 24 (3), 305-317 (2013)
   PUBMED   24029230
REFERENCE   3  (bases 1 to 1916)
  AUTHORS   Joshi,K., Lee,S., Lee,B., Lee,J.W. and Lee,S.K.
  TITLE     LMO4 controls the balance between excitatory and inhibitory spinal
            V2 interneurons
  JOURNAL   Neuron 61 (6), 839-851 (2009)
   PUBMED   19323994
REFERENCE   4  (bases 1 to 1916)
  AUTHORS   Nishioka,N., Nagano,S., Nakayama,R., Kiyonari,H., Ijiri,T.,
            Taniguchi,K., Shawlot,W., Hayashizaki,Y., Westphal,H.,
            Behringer,R.R., Matsuda,Y., Sakoda,S., Kondoh,H. and Sasaki,H.
  TITLE     Ssdp1 regulates head morphogenesis of mouse embryos by activating
            the Lim1-Ldb1 complex
  JOURNAL   Development 132 (11), 2535-2546 (2005)
   PUBMED   15857913
REFERENCE   5  (bases 1 to 1916)
  AUTHORS   Raval-Fernandes,S., Kickhoefer,V.A. and Rome,L.H.
  TITLE     Cloning of a cDNA encoding a sequence-specific
            single-stranded-DNA-binding protein from Rattus norvegicus
  JOURNAL   Gene 237 (1), 201-207 (1999)
   PUBMED   10524251
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            [WARNING] On Mar 18, 2025 this sequence was replaced by
            NM_053358.3.
            
            On Nov 26, 2020 this sequence version replaced NM_053358.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF121893.1, BC107666.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-401               JAXUCZ010000005.1  126920201-126920601
            402-474             JAXUCZ010000005.1  126921562-126921634
            475-536             JAXUCZ010000005.1  126921854-126921915
            537-621             JAXUCZ010000005.1  126924241-126924325
            622-711             JAXUCZ010000005.1  127018017-127018106
            712-771             JAXUCZ010000005.1  127037215-127037274
            772-838             JAXUCZ010000005.1  127040034-127040100
            839-915             JAXUCZ010000005.1  127040190-127040266
            916-980             JAXUCZ010000005.1  127045623-127045687
            981-1029            JAXUCZ010000005.1  127046262-127046310
            1030-1065           JAXUCZ010000005.1  127046896-127046931
            1066-1120           JAXUCZ010000005.1  127047469-127047523
            1121-1191           JAXUCZ010000005.1  127048676-127048746
            1192-1270           JAXUCZ010000005.1  127054592-127054670
            1271-1299           JAXUCZ010000005.1  127055509-127055537
            1300-1401           JAXUCZ010000005.1  127055633-127055734
            1402-1916           JAXUCZ010000005.1  127056308-127056822
FEATURES             Location/Qualifiers
     source          1..1916
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q34"
     gene            1..1916
                     /gene="Ssbp3"
                     /gene_synonym="Ssdp; Ssdp3"
                     /note="single stranded DNA binding protein 3"
                     /db_xref="GeneID:84354"
                     /db_xref="RGD:621502"
     exon            1..401
                     /gene="Ssbp3"
                     /gene_synonym="Ssdp; Ssdp3"
                     /inference="alignment:Splign:2.1.0"
     CDS             346..1431
                     /gene="Ssbp3"
                     /gene_synonym="Ssdp; Ssdp3"
                     /note="sequence-specific single-stranded-DNA-binding
                     protein"
                     /codon_start=1
                     /product="single-stranded DNA-binding protein 3"
                     /protein_id="NP_445810.2"
                     /db_xref="GeneID:84354"
                     /db_xref="RGD:621502"
                     /translation="MFAKGKGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEI
                     RWEKNITLGEPPGFLHSWWCVFWDLYCAAPERRDTCEHSSEAKAFHDYSAAAAPSPVL
                     GNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMGNQPPGGVPGTQPLLPNSMDP
                     TRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGINMGPGAGR
                     PWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPP
                     GGSRSNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTP
                     RDDGELGGNFLHSFQNDNYSPSMTMSV"
     exon            402..474
                     /gene="Ssbp3"
                     /gene_synonym="Ssdp; Ssdp3"
                     /inference="alignment:Splign:2.1.0"
     exon            475..536
                     /gene="Ssbp3"
                     /gene_synonym="Ssdp; Ssdp3"
                     /inference="alignment:Splign:2.1.0"
     exon            537..621
                     /gene="Ssbp3"
                     /gene_synonym="Ssdp; Ssdp3"
                     /inference="alignment:Splign:2.1.0"
     exon            622..711
                     /gene="Ssbp3"
                     /gene_synonym="Ssdp; Ssdp3"
                     /inference="alignment:Splign:2.1.0"
     exon            712..771
                     /gene="Ssbp3"
                     /gene_synonym="Ssdp; Ssdp3"
                     /inference="alignment:Splign:2.1.0"
     exon            772..838
                     /gene="Ssbp3"
                     /gene_synonym="Ssdp; Ssdp3"
                     /inference="alignment:Splign:2.1.0"
     exon            839..915
                     /gene="Ssbp3"
                     /gene_synonym="Ssdp; Ssdp3"
                     /inference="alignment:Splign:2.1.0"
     exon            916..980
                     /gene="Ssbp3"
                     /gene_synonym="Ssdp; Ssdp3"
                     /inference="alignment:Splign:2.1.0"
     exon            981..1029
                     /gene="Ssbp3"
                     /gene_synonym="Ssdp; Ssdp3"
                     /inference="alignment:Splign:2.1.0"
     exon            1030..1065
                     /gene="Ssbp3"
                     /gene_synonym="Ssdp; Ssdp3"
                     /inference="alignment:Splign:2.1.0"
     exon            1066..1120
                     /gene="Ssbp3"
                     /gene_synonym="Ssdp; Ssdp3"
                     /inference="alignment:Splign:2.1.0"
     exon            1121..1191
                     /gene="Ssbp3"
                     /gene_synonym="Ssdp; Ssdp3"
                     /inference="alignment:Splign:2.1.0"
     exon            1192..1270
                     /gene="Ssbp3"
                     /gene_synonym="Ssdp; Ssdp3"
                     /inference="alignment:Splign:2.1.0"
     exon            1271..1299
                     /gene="Ssbp3"
                     /gene_synonym="Ssdp; Ssdp3"
                     /inference="alignment:Splign:2.1.0"
     exon            1300..1401
                     /gene="Ssbp3"
                     /gene_synonym="Ssdp; Ssdp3"
                     /inference="alignment:Splign:2.1.0"
     exon            1402..1916
                     /gene="Ssbp3"
                     /gene_synonym="Ssdp; Ssdp3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcggcggca gaggcagcgg tgctgaaggc gcagagggcg gcgcaggcgg agccgggtgg
       61 cgggcgcgcg ggccgcgagc aagcgagctg caggcttcgg gcgggcggcg gcgcagctca
      121 ggccgagccg gcgcgggagg agttccaggg cgatggggcc gcggccgggg ctgacgcttt
      181 gacagctgga aagagcgcgg agccagcgcc ggggagggag ggagcgcggc gagcggagtg
      241 cgagcgagcg ggcgagcgcc gggagggggc cgggagcagg gcagctcggg agaccggacg
      301 gtagcggcgg cggcggcggg ctcggcgccc tcttctctgc aagccatgtt tgccaaaggc
      361 aaaggctcgg cggtgccctc ggacgggcag gctcgggaaa agttagcttt atatgtctac
      421 gaatatttac tgcacgtagg agcacagaaa tctgcacaga ccttcttatc agagattcga
      481 tgggaaaaaa acatcacact gggtgaaccg cctgggtttc tgcactcgtg gtggtgtgta
      541 ttttgggacc tttactgtgc agctcctgaa aggagagaca cttgtgaaca ttcaagtgaa
      601 gcaaaagcct ttcatgatta cagtgcagca gctgccccaa gtcctgtgct tggcaacatt
      661 ccccccaatg atgggatgcc tggaggcccc atcccaccag gtttctttca gccttttatg
      721 tcaccgagat atgcaggcgg ccccaggccc ccgatcagaa tgggaaacca gcctccagga
      781 ggagttcctg ggacacagcc attgctgccc aattccatgg atcccacacg acaacaaggt
      841 caccccaaca tgggagggtc aatgcagaga atgaaccctc cccgaggcat ggggcccatg
      901 gggcctggcc cacagaatta cggcagcggc atgagaccac cacccaactc cctcggcccc
      961 gccatgcctg ggattaacat gggcccagga gctggcagac cctggcccaa tcccaacagt
     1021 gctaactcaa tcccgtactc ctcctcatca cccggaacct atgtgggacc ccctggtggt
     1081 ggcggccctc ctggaacccc catcatgcct agtcctgcgg attcaacaaa ttccagtgac
     1141 aacatctaca caatgattaa tcctgtgccg cctggaggca gccggtctaa ctttccaatg
     1201 ggtcctggct cagatggccc aatgggcggc atgggaggca tggagccaca ccacatgaat
     1261 ggatccttag gatcaggcga catagatgga cttccaaaaa attctcctaa caacataagt
     1321 ggcattagca accctccagg cacccctcgg gatgacggcg agctgggggg gaacttcctc
     1381 cactccttcc agaacgacaa ttattctcca agcatgacga tgagtgtgtg atcccttctc
     1441 cacaacgctg agagccggca ttgcaggcag aagatgccag aaattatgca agaagaagtg
     1501 aggtgtcgat accaggagct gggggagggc gtctcctgct cccctccatc cctcccattc
     1561 tctcccccac ctttcccaat tttagtttca tgcaataaaa aggccaaact ttttattccg
     1621 tcaaacatga aggacaaaac tcagaaatat atttcaagtc aacgaccaga aaaatctcac
     1681 cttctccctg cccaaaagga cctttctgta catgacactt tttgttgggt ttttttgttt
     1741 gtttgtttgt ttgtttgttt gggattttac tgttgctggg attttaaatt tgtttttttg
     1801 gggggattct ttgggggaat ttttttaatg gaagcttcta gcaagcccta tgcccaccca
     1861 atcaacctca ttgctttctt ctttaataaa aggaaaaaag gaaaaagaaa aaaaag
//
