LOCUS       NM_001399027            6715 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus single-stranded DNA binding protein 2 (Ssbp2),
            transcript variant 1, mRNA.
ACCESSION   NM_001399027 XM_039103435
VERSION     NM_001399027.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6715)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Dec 29, 2021 this sequence version replaced XM_039103435.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643285.6813.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-117               JAXUCZ010000002.1  24386424-24386540
            118-190             JAXUCZ010000002.1  24475788-24475860
            191-252             JAXUCZ010000002.1  24488515-24488576
            253-300             JAXUCZ010000002.1  24495483-24495530
            301-385             JAXUCZ010000002.1  24500945-24501029
            386-475             JAXUCZ010000002.1  24592430-24592519
            476-535             JAXUCZ010000002.1  24614969-24615028
            536-602             JAXUCZ010000002.1  24630118-24630184
            603-673             JAXUCZ010000002.1  24630809-24630879
            674-741             JAXUCZ010000002.1  24635053-24635120
            742-790             JAXUCZ010000002.1  24640565-24640613
            791-826             JAXUCZ010000002.1  24645651-24645686
            827-881             JAXUCZ010000002.1  24647714-24647768
            882-952             JAXUCZ010000002.1  24652078-24652148
            953-1034            JAXUCZ010000002.1  24653638-24653719
            1035-1063           JAXUCZ010000002.1  24655711-24655739
            1064-1162           JAXUCZ010000002.1  24659535-24659633
            1163-6715           JAXUCZ010000002.1  24668216-24673768
FEATURES             Location/Qualifiers
     source          1..6715
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q12"
     gene            1..6715
                     /gene="Ssbp2"
                     /gene_synonym="RGD1562968"
                     /note="single-stranded DNA binding protein 2"
                     /db_xref="GeneID:361877"
                     /db_xref="RGD:1562968"
     exon            1..117
                     /gene="Ssbp2"
                     /gene_synonym="RGD1562968"
                     /inference="alignment:Splign:2.1.0"
     CDS             56..1192
                     /gene="Ssbp2"
                     /gene_synonym="RGD1562968"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="single-stranded DNA-binding protein 2 isoform 1"
                     /protein_id="NP_001385956.1"
                     /db_xref="GeneID:361877"
                     /db_xref="RGD:1562968"
                     /translation="MYGKGKSNSSAVPSDSQAREKLALYVYEYLLHVGAQKSAQTFLS
                     EIRWEKNITLGEPPGFLHSWWWKVWWLSIPGPECFYSPVFWDLYCAAPERRETCEHSS
                     EAKAFHDYSAAAAPSPVLGNMPPGDGMPVGPVPPGFFQPFMSPRYPGGPRPPLRIPNQ
                     ALGGVPGSQPLLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPLGPQNYGGAMRPPLNA
                     LGGPGMPGMNMGPGGGRPWPNPTNANSIPYSSASPGNYVGPPGGGGPPGTPIMPSPAD
                     STNSGDNMYTLMNAVPPGPNRPNQFPMGPGSDGPMGGLGGMESHHMNGSLGSGDMDSI
                     SKNSPNNMSLSNQPGTPRDDGEMGGNFLNPFQSESYSPSMTMSV"
     exon            118..190
                     /gene="Ssbp2"
                     /gene_synonym="RGD1562968"
                     /inference="alignment:Splign:2.1.0"
     exon            191..252
                     /gene="Ssbp2"
                     /gene_synonym="RGD1562968"
                     /inference="alignment:Splign:2.1.0"
     exon            253..300
                     /gene="Ssbp2"
                     /gene_synonym="RGD1562968"
                     /inference="alignment:Splign:2.1.0"
     exon            301..385
                     /gene="Ssbp2"
                     /gene_synonym="RGD1562968"
                     /inference="alignment:Splign:2.1.0"
     exon            386..475
                     /gene="Ssbp2"
                     /gene_synonym="RGD1562968"
                     /inference="alignment:Splign:2.1.0"
     exon            476..535
                     /gene="Ssbp2"
                     /gene_synonym="RGD1562968"
                     /inference="alignment:Splign:2.1.0"
     exon            536..602
                     /gene="Ssbp2"
                     /gene_synonym="RGD1562968"
                     /inference="alignment:Splign:2.1.0"
     exon            603..673
                     /gene="Ssbp2"
                     /gene_synonym="RGD1562968"
                     /inference="alignment:Splign:2.1.0"
     exon            674..741
                     /gene="Ssbp2"
                     /gene_synonym="RGD1562968"
                     /inference="alignment:Splign:2.1.0"
     exon            742..790
                     /gene="Ssbp2"
                     /gene_synonym="RGD1562968"
                     /inference="alignment:Splign:2.1.0"
     exon            791..826
                     /gene="Ssbp2"
                     /gene_synonym="RGD1562968"
                     /inference="alignment:Splign:2.1.0"
     exon            827..881
                     /gene="Ssbp2"
                     /gene_synonym="RGD1562968"
                     /inference="alignment:Splign:2.1.0"
     exon            882..952
                     /gene="Ssbp2"
                     /gene_synonym="RGD1562968"
                     /inference="alignment:Splign:2.1.0"
     exon            953..1034
                     /gene="Ssbp2"
                     /gene_synonym="RGD1562968"
                     /inference="alignment:Splign:2.1.0"
     exon            1035..1063
                     /gene="Ssbp2"
                     /gene_synonym="RGD1562968"
                     /inference="alignment:Splign:2.1.0"
     exon            1064..1162
                     /gene="Ssbp2"
                     /gene_synonym="RGD1562968"
                     /inference="alignment:Splign:2.1.0"
     exon            1163..6715
                     /gene="Ssbp2"
                     /gene_synonym="RGD1562968"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaggctgtga tgggttgaca ggtgcgtgac agtgggagct gctctcggca caagcatgta
       61 cggcaaaggc aagagtaaca gcagcgccgt cccgtccgac agccaggccc gggagaagtt
      121 agcgctctac gtgtatgaat atctgctcca tgtaggagct cagaaatcgg cccagacatt
      181 tttatcagag ataagatggg aaaaaaacat cacattgggg gagccgccag gattcttaca
      241 ttcttggtgg tggaaggtgt ggtggctgtc gatccctggt ccagagtgct tctacagtcc
      301 tgtgttttgg gatctctact gtgcagctcc agagagacgg gaaacctgtg aacactcgag
      361 cgaagcaaaa gccttccatg attatagtgc tgcagcagct cccagccccg tgctaggaaa
      421 catgccccca ggagatggca tgcccgtagg ccccgtgcca ccagggttct ttcagccttt
      481 tatgtcacct cggtaccctg gaggcccaag gcccccgttg agaataccta atcaggcact
      541 tggaggtgtc ccaggaagtc agccattact ccccagtgga atggacccaa cacgacaaca
      601 aggacatcca aatatgggcg gaccgatgca gagaatgact cccccaagag gaatggtgcc
      661 cttaggacca cagaactatg gaggtgcaat gagaccccca ctgaatgctt taggtggccc
      721 cggaatgcct ggaatgaaca tgggtccagg tggtggtaga ccgtggccaa acccaacaaa
      781 tgccaattca ataccctact cctcggcgtc tcctgggaac tacgtaggtc ctccaggagg
      841 tggaggacca ccaggaacac ccatcatgcc tagtccagca gattcaacca attcgggaga
      901 caacatgtat actttaatga atgcagtacc tcctgggcct aacagaccta atcagtttcc
      961 aatgggccct ggatcagatg gtcccatggg tggattagga ggaatggagt cccaccacat
     1021 gaacggctct ttaggctcag gagacatgga cagtatttcc aagaattctc ccaataatat
     1081 gagcttgagt aaccagccgg gcactccaag ggatgatggc gaaatggggg gcaatttcct
     1141 aaatcccttt cagagtgaaa gttactcgcc tagcatgacc atgagtgtgt gatccattac
     1201 cgcgtcccct catgaaaacc atcgtgagtc agcccatcac aaaactacta cggaagaaaa
     1261 ctactcatcg tgtacagtta gacaacggaa tctcagacaa ccagaccacc ttttagttcc
     1321 tgctctctcc cctattttga gaagaaagcg ggtccacacg tgattcaagc aactgtacgg
     1381 agctgcccat tagctgcccc aactgaactg cggtgattat ctgtgtgtgt gtggggaaga
     1441 gaatgcatcg tatgtgcaga tctgtatgca catatatgca tacgtgcatt gacccacagg
     1501 acattgtaag atattatcac atgacatctt aagtagaagt aagtagggac ttttattcca
     1561 tccttttttt ttcacgttta cattttaatt attaaaggtt gctcctgccc ttcctgaact
     1621 attttgtgct gtgtacatca ctgctttata taagttattt tttaaggtga actcagatgt
     1681 tatggttttg taaatgtctg caatcatgga taggaataaa attgcttatt tgagagcttt
     1741 cattcactgt gtctgaagca agttgcctgt gaacccagag tgtaccgagt agagacagtg
     1801 tcttcgtcct catgtccaac caagcgttct gttcccttct gtgcagagta gtgtgctgct
     1861 ttgtatgtaa ggaaaatgca gggcctcaca cagtacattt ctgcagtaac tgtttaaact
     1921 gagttccttc ttgatttgtt tgtcttaatg atgcagaaat gattagctaa ttcaagttac
     1981 ctacactgta gcaataaagt gacacaggtt accatacttt tagcacacat tcttaaacac
     2041 aataaaatcc aaaagtgata gcaaaaccac ttgtttgagt ttcagcttct cccagggatc
     2101 tagaagtaaa attttaataa tatacagtga ggaatggtac tgtattttta ttcagatttc
     2161 ctatgatcat ttccagacac ttgaaaacag acagacacac tgacatggtt gaggctttca
     2221 gggcagagag cagagaatga gaacactgga gggttgcagc gtttctggtt ttctcaccca
     2281 gtagcttgcc tgctggagca gaactgatgt ccctgctctc agttggcagt gtatgtgccc
     2341 tgtccactct gttttggggt cagaggactt gcactgggag gcagattatc tgtataactt
     2401 gtgttgactg cagctggcta gatctccatt gtgtgtctga cagtttggaa ggcagtaaag
     2461 agacagtttt taattatctt ccttacaaaa gcgccctgct gcatggcatt tccctcatct
     2521 gtgggattac atttaatcct gtactcaaac actaaatccc cataggaaaa gcatagagag
     2581 tttattttat actctaagag agacctctat gatccttgct ggtctagctg aggtacaaat
     2641 gtccactgat ctccaccctg ctagcgagta ctgcccagcc tgacgggaga ggacacctcc
     2701 ctttcctttg gggctataaa tgttgacact gtttgcctgc acgtggttct agatgatcaa
     2761 atttctttca aatccacatt gattcattct tcctgaaaat ggacagtttt ggctgggcat
     2821 tacagggatg ctgggagcat ggaggataaa gaattaactt accctgcaga tctaggtgac
     2881 acttatgagt catagtttat agcacagcgt tggcctacaa ctgcaccaga gagcagcctt
     2941 gtaccagcag actacaggaa cctgtctcag gcagttggca caggaagtct ttaccttcag
     3001 gtggagctaa tctgaggatg acgcttcatg cattcacctg aaccacaggt atcagtggca
     3061 gctttcactc tctatacgac cataaaccac agtttaccag agttaaactg ttttcagtaa
     3121 tctcggtctt agggtgctgg acttctgctc actctgctct ccatcacgac cagcctttcc
     3181 tttctgtcat ttgtgttctg agaagggaag caaatgattc ctcttacaca caaaaatcat
     3241 ggaactaatt ttgcatgccc ttctttggga atagttctag aatataaatg acataaatgg
     3301 cgtgttaata atgatataag cagcgtgtgc tacttctaac ctgttttgtt tcttaagaag
     3361 taagatggtt ttgtttttgt tttcatttcc ttactttctt ggaactcagt tttaaaaata
     3421 cctggtccca atttgtaaat tcattaaaac cgtaaaaatt atttttaaga taaaactgca
     3481 ttcacaaact agaaaataca agaatgctta atttctttag ccagataact ttgttaccca
     3541 aagggtaaac actaaaacta cattgatttt tatgtagatc ttaattattt aacatttatt
     3601 gtgttcctgg taagaaaagc caacattttc ttaagcattc taccgggact gacacattca
     3661 tgctgtcttg atgtatatgc tgcttgccag aggttttggg ggtttttttt ggtttttttt
     3721 ttttgttttg tttttgtttt ttttttgcat atttcagcac ataatgatga aatcagcaat
     3781 actcacatat attggacatg gcatgcaccc atcaaatctg agattgggca atcattgtga
     3841 gcatgaatcc tgttcctctt cctgccctcc ctaacgcact aatgtttgaa agctcaagtc
     3901 agtctaagtt ctgtgtggtt cttaaccatc tgactgtctt actgcgaaga tgccctgtgt
     3961 tttaaaaaaa aggcttttgg gtacactgat ctcgtaaaac cacaaactta atgggcaaat
     4021 tagtgctcct ttgaaaatat tccagtttgg gttcaattgc tagtgaacag gaatttcacg
     4081 gctaaaaatc tgaggttaag atttctcgat tgccaaaaga ctaacaaatc aattctgctc
     4141 ccttcagcca aggaaagcgc tcagacacac ctgtccctgc agaaatttag agaaaaattc
     4201 tgttcccctt cagccgagga aagcactcag acacacctgt ccctacagaa attaaataga
     4261 gaaaatttgt tccacctctc ttttcatgtt ctgtaaggca ccggaactcg gttgcatttg
     4321 aaaggaccat tcaggtaaac agtcttgagc tttgaagaca gcaggtggag taagttcacg
     4381 ttggcatgtg agtagcccca cagctgtcta catcattctc cacattgtgg ggctgtgccc
     4441 tcggcagcct ggggctgtgc cctcggcagg gactgtgcac agttctcagt atatcagacc
     4501 tgggttagct tacggcttct ccatgcttgc cttccatccc aggagacaag atgcaagggt
     4561 tgaacagctc tcccttctca gcctcacagc tgtcgtctct gcacagtgta tatagtactg
     4621 gtggtagttt tcctgaggaa aacgttttca gttttcattc cttgattatt actgttcatc
     4681 acaagcagta ttacagatca cagccacgcg acatctgaat gttctcttga cactgttccc
     4741 tgttgtgttt cgtgtgctgt agttctttct cctttgcttg agacattaac agaggcaagt
     4801 agctcacgaa tatgtggtgt agagagggga gattggtgtg ttcagacaat agtcacgcat
     4861 tttaacaaat gccaattagt cttttgtagt tttcccttct tggtgtatta catttctctg
     4921 acatgagaac caaaagccca tgcttgctta aaacaatgtt tccagtttta agcatctgta
     4981 acagtctccc ctggtctgag aaagatgccc agaaacacgg gaaaagtaag agtggcaaat
     5041 ttgttaatac cacctcagtt ctgcatacga catttgtgta tacctgtgtg catgtgttgg
     5101 gggatggcaa cataaatttt gctcataaac cccacttcta ctgagatcgt attattttat
     5161 atagcactgt tgatagatag taaacatctt tttcttttga cattttattt cagtggtaat
     5221 atatctgata gaagttattt gggatggcaa gagaggagaa caccacgatt ctgtatattg
     5281 gacaatatat cagcaggagt agtgtcccag gcccagattt agcttctcag cattggacat
     5341 catactaagc gtgtcagaaa tcatgcagta attacagtat aagaagttga attgacatca
     5401 tctaaaccgt taacttcacc catgaaccat aattcagtta ggatgacgta atgattaaca
     5461 cacacctgag actttcagtg acttctctag actctattat gaagagagag attcagctga
     5521 ctgagtccca agggtttcct ctgttgagtt tcccttggta acttacagaa tttgttttct
     5581 taagtaagag aatcatttct gtatgaagtt taaatgtgaa tattttgcat tttaaaatga
     5641 aatacagtag aaaaatgaaa tatataaatg ttacagcatt taatgtggga ctgggccttc
     5701 tcatgtatac gtttcctagg tattggtagg ataaatgttt gcttcacttt gactgtccca
     5761 gtcactggaa tcttatgatc tgcttctaaa atacttagtg ttttatttct aaagcaagat
     5821 gggctgttac catggcaaag gtaagtgtta atagtccttg agaaaaatat ataaatattt
     5881 gttctcagtt actgcatttc actttctcct ccgtgacagc ggtcccagta tgtgacctga
     5941 gggtgaggtc tgggtctttg ataggagtct atacagtctg catagtatgc tgtgtctctg
     6001 gaacagtgtt ggttaaatgt agtcaaccat ctgtttggaa acaacacctc agatcatctg
     6061 cccatcttac atgatttgag cggagatcta aattcttcac aatactttag agattttctt
     6121 gacaaagtac tgattgaagt ttgtgtgtgg atttagatca aacttcaaaa atacttactt
     6181 tccttgcatt aagacagcta taaactctcc gttaggcaaa tgcttggaag gacatgttac
     6241 tgtttcagat gtaaagattg agaagtcctt atacatagaa ttctttattc atggtagcca
     6301 tatgattatt gaattgttta tctaattgtg attttaagaa tttaaaatgt tttcttacta
     6361 cacgtgttaa attgttacaa tgtcttcctg gaaaatagag ttatttgtaa ggtttttata
     6421 aatgcacaat ctgtgtataa atataattga agtctgggat gactcggtaa ttacgactct
     6481 ccgttcagga acgggcacca ggtaacccac acacttgtca acgtagcact tgtgtgtata
     6541 tatctttgtg cacatgtaca ttgttattct caagtgaatt tatcacttaa tgtttttgta
     6601 aaagtacttg agctgtttgt gtaatgcaaa aagtcaccat aaagatgtac ataaatgccc
     6661 cgtaagttgg cacgtcttca tatttaattg ataaaattgc agcttttgat ttaca
//
