LOCUS       NM_001398699             585 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus SS18 like 2 (Ss18l2), mRNA.
ACCESSION   NM_001398699 XM_003750606
VERSION     NM_001398699.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 585)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Dec 21, 2021 this sequence version replaced XM_003750606.5.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BQ781104.1, DV726825.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-147               JAXUCZ010000008.1  130252774-130252920
            148-224             JAXUCZ010000008.1  130253088-130253164
            225-585             JAXUCZ010000008.1  130255028-130255388
FEATURES             Location/Qualifiers
     source          1..585
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q32"
     gene            1..585
                     /gene="Ss18l2"
                     /note="SS18 like 2"
                     /db_xref="GeneID:687029"
                     /db_xref="RGD:1590139"
     exon            1..147
                     /gene="Ss18l2"
                     /inference="alignment:Splign:2.1.0"
     CDS             79..312
                     /gene="Ss18l2"
                     /note="synovial sarcoma translocation gene on chromosome
                     18-like 2"
                     /codon_start=1
                     /product="SS18-like protein 2"
                     /protein_id="NP_001385628.1"
                     /db_xref="GeneID:687029"
                     /db_xref="RGD:1590139"
                     /translation="MSVIFAPDWLRGKAKVNQETIQRLLEENDQLIRCIVEYQNKGRA
                     NECVQYQHVLHRNLIYLATIADANTSSLTKAVE"
     exon            148..224
                     /gene="Ss18l2"
                     /inference="alignment:Splign:2.1.0"
     exon            225..585
                     /gene="Ss18l2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acactcagag gcgcaggctt gcgtcagcag cgcgcgacgt ggggtctccc agctcgggat
       61 tccgagcttc tttacagcat gtccgtcatc ttcgctcctg actggttacg cggcaaggcc
      121 aaggtcaacc aggagactat ccagcggctc ctggaggaga atgaccagct gatccgctgt
      181 atcgtggagt atcagaacaa gggtcgagcg aacgagtgcg tccagtatca gcatgtgtta
      241 cacagaaatc tcatttattt ggccaccatc gcagacgcca acacaagcag tcttacaaag
      301 gcagtggagt agtcttccag ggggctgtga tgagcagtga ctgcatggaa cccatctcct
      361 gtgaaataga gcgctgctta gtacatggcg aaaggtgcca ttcattttag actgtgatga
      421 aacttgctac caattctacc atattcttac tgtaaatatt ttagtgataa aacagatccc
      481 acagtagaac tgtgaggacc tgaggtatgt gtgacggcag tgtcattgtc aacaatactg
      541 cttcattatc taatactgtg taataataaa tgatgcacgc ctctc
//
