LOCUS       NP_001094370             418 aa            linear   ROD 03-APR-2024
DEFINITION  protein SSXT [Rattus norvegicus].
ACCESSION   NP_001094370 XP_001073112 XP_341581
VERSION     NP_001094370.1
DBSOURCE    REFSEQ: accession NM_001100900.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (residues 1 to 418)
  AUTHORS   Alpsoy,A. and Dykhuizen,E.C.
  TITLE     Glioma tumor suppressor candidate region gene 1 (GLTSCR1) and its
            paralog GLTSCR1-like form SWI/SNF chromatin remodeling subcomplexes
  JOURNAL   J Biol Chem 293 (11), 3892-3903 (2018)
   PUBMED   29374058
REFERENCE   2  (residues 1 to 418)
  AUTHORS   Staahl,B.T., Tang,J., Wu,W., Sun,A., Gitler,A.D., Yoo,A.S. and
            Crabtree,G.R.
  TITLE     Kinetic analysis of npBAF to nBAF switching reveals exchange of
            SS18 with CREST and integration with neural developmental pathways
  JOURNAL   J Neurosci 33 (25), 10348-10361 (2013)
   PUBMED   23785148
REFERENCE   3  (residues 1 to 418)
  AUTHORS   Barco,R., Hunt,L.B., Frump,A.L., Garcia,C.B., Benesh,A.,
            Caldwell,R.L. and Eid,J.E.
  TITLE     The synovial sarcoma SYT-SSX2 oncogene remodels the cytoskeleton
            through activation of the ephrin pathway
  JOURNAL   Mol Biol Cell 18 (10), 4003-4012 (2007)
   PUBMED   17686994
REFERENCE   4  (residues 1 to 418)
  AUTHORS   Iwasaki,T., Koibuchi,N. and Chin,W.W.
  TITLE     Synovial sarcoma translocation (SYT) encodes a nuclear receptor
            coactivator
  JOURNAL   Endocrinology 146 (9), 3892-3899 (2005)
   PUBMED   15919756
REFERENCE   5  (residues 1 to 418)
  AUTHORS   Clark,J., Rocques,P.J., Crew,A.J., Gill,S., Shipley,J., Chan,A.M.,
            Gusterson,B.A. and Cooper,C.S.
  TITLE     Identification of novel genes, SYT and SSX, involved in the
            t(X;18)(p11.2;q11.2) translocation found in human synovial sarcoma
  JOURNAL   Nat Genet 7 (4), 502-508 (1994)
   PUBMED   7951320
REFERENCE   6  (residues 1 to 418)
  AUTHORS   Phelan,J.P.
  TITLE     Genetic variability and rodent models of human aging
  JOURNAL   Exp Gerontol 27 (2), 147-159 (1992)
   PUBMED   1521591
  REMARK    Review article
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000018.1.
            
            On or before Sep 13, 2008 this sequence version replaced
            XP_341581.3, XP_001073112.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.2186308.1,
                                           SRR22582416.1743751.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..418
                     /organism="Rattus norvegicus"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18p13"
     Protein         1..418
                     /product="protein SSXT"
                     /note="synovial sarcoma translocation, Chromosome 18;
                     SS18, nBAF chromatin remodeling complex subunit"
                     /calculated_mol_wt=45567
     Region          14..73
                     /region_name="SSXT"
                     /note="SSXT protein (N-terminal region); pfam05030"
                     /db_xref="CDD:428268"
     Region          <71..>238
                     /region_name="PAT1"
                     /note="Topoisomerase II-associated protein PAT1;
                     pfam09770"
                     /db_xref="CDD:401645"
     Region          <163..283
                     /region_name="PABP-1234"
                     /note="polyadenylate binding protein, human types 1, 2, 3,
                     4 family; TIGR01628"
                     /db_xref="CDD:130689"
     CDS             1..418
                     /gene="Ss18"
                     /coded_by="NM_001100900.1:53..1309"
                     /db_xref="GeneID:361295"
                     /db_xref="RGD:1311919"
ORIGIN      
        1 msvafaaprq rgkgeitpaa iqkmldennh liqcimdyqn kgkasecsqy qqilhtnlvy
       61 latiadsnqn mqsllpappt qnvpmgpggm sqsgpppppr shsmpsdgmv gggppaphmq
      121 nqmngqmpgp nhmpmqgpgp sqlsmtnssm nmpssshgsm ggynhsvpss qsmpvqnqmt
      181 msqgqpmgny gprpnmnmqp nqgpmmhqqp psqqysmppg gaqhyqgqqa pmglmgqvnq
      241 gshmmgqrqm ppyrppqqgp pqqysgqedy ygdqyshggq gppegmnqqy ypdghndygy
      301 qqpsypeqgy drpyeessph yceggnsqyg qqqdayqgpp pqqgyppqqq qypgqqgypg
      361 qqqgygptqg gpgpqypnyp qgqgqqyggy rptqpgppqp pqqrpygydq gqygnyqq
//
