LOCUS       NM_001009255            1120 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus serine and arginine rich splicing factor 9
            (Srsf9), mRNA.
ACCESSION   NM_001009255 XM_213798
VERSION     NM_001009255.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1120)
  AUTHORS   Tariq,A., Garncarz,W., Handl,C., Balik,A., Pusch,O. and
            Jantsch,M.F.
  TITLE     RNA-interacting proteins act as site-specific repressors of
            ADAR2-mediated RNA editing and fluctuate upon neuronal stimulation
  JOURNAL   Nucleic Acids Res 41 (4), 2581-2593 (2013)
   PUBMED   23275536
REFERENCE   2  (bases 1 to 1120)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 1120)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   4  (bases 1 to 1120)
  AUTHORS   Yoshino,H., Enokida,H., Chiyomaru,T., Tatarano,S., Hidaka,H.,
            Yamasaki,T., Gotannda,T., Tachiwada,T., Nohata,N., Yamane,T.,
            Seki,N. and Nakagawa,M.
  TITLE     Tumor suppressive microRNA-1 mediated novel apoptosis pathways
            through direct inhibition of splicing factor serine/arginine-rich 9
            (SRSF9/SRp30c) in bladder cancer
  JOURNAL   Biochem Biophys Res Commun 417 (1), 588-593 (2012)
   PUBMED   22178073
REFERENCE   5  (bases 1 to 1120)
  AUTHORS   Wei,Z.S., Hong,M.F., Su,Q.X., Wang,X.H., Yu,Q.Y., Peng,Z.X.,
            Zhang,M.X., Jie,A., Wang,R. and Huang,Y.Q.
  TITLE     Super-high-dose methylprednisolone does not improve efficacy or
            induce glucocorticoid resistance in experimental allergic
            encephalomyelitis
  JOURNAL   Neuroimmunomodulation 18 (1), 28-36 (2011)
   PUBMED   20616573
REFERENCE   6  (bases 1 to 1120)
  AUTHORS   Moser,K. and White,F.M.
  TITLE     Phosphoproteomic analysis of rat liver by high capacity IMAC and
            LC-MS/MS
  JOURNAL   J Proteome Res 5 (1), 98-104 (2006)
   PUBMED   16396499
REFERENCE   7  (bases 1 to 1120)
  AUTHORS   Wang,J., Gao,Q.S., Wang,Y., Lafyatis,R., Stamm,S. and Andreadis,A.
  TITLE     Tau exon 10, whose missplicing causes frontotemporal dementia, is
            regulated by an intricate interplay of cis elements and trans
            factors
  JOURNAL   J Neurochem 88 (5), 1078-1090 (2004)
   PUBMED   15009664
REFERENCE   8  (bases 1 to 1120)
  AUTHORS   Stoss,O., Olbrich,M., Hartmann,A.M., Konig,H., Memmott,J.,
            Andreadis,A. and Stamm,S.
  TITLE     The STAR/GSG family protein rSLM-2 regulates the selection of
            alternative splice sites
  JOURNAL   J Biol Chem 276 (12), 8665-8673 (2001)
   PUBMED   11118435
REFERENCE   9  (bases 1 to 1120)
  AUTHORS   Venables,J.P., Elliott,D.J., Makarova,O.V., Makarov,E.M.,
            Cooke,H.J. and Eperon,I.C.
  TITLE     RBMY, a probable human spermatogenesis factor, and other hnRNP G
            proteins interact with Tra2beta and affect splicing
  JOURNAL   Hum Mol Genet 9 (5), 685-694 (2000)
   PUBMED   10749975
REFERENCE   10 (bases 1 to 1120)
  AUTHORS   Nayler,O., Stratling,W., Bourquin,J.P., Stagljar,I., Lindemann,L.,
            Jasper,H., Hartmann,A.M., Fackelmayer,F.O., Ullrich,A. and Stamm,S.
  TITLE     SAF-B protein couples transcription and pre-mRNA splicing to
            SAR/MAR elements
  JOURNAL   Nucleic Acids Res 26 (15), 3542-3549 (1998)
   PUBMED   9671816
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC087684.1.
            
            On Jan 7, 2005 this sequence version replaced XM_213798.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC087684.1, CO395358.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
FEATURES             Location/Qualifiers
     source          1..1120
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q16"
     gene            1..1120
                     /gene="Srsf9"
                     /gene_synonym="Sfrs9"
                     /note="serine and arginine rich splicing factor 9"
                     /db_xref="GeneID:288701"
                     /db_xref="RGD:1309495"
     exon            1..251
                     /gene="Srsf9"
                     /gene_synonym="Sfrs9"
                     /inference="alignment:Splign:2.1.0"
     CDS             64..729
                     /gene="Srsf9"
                     /gene_synonym="Sfrs9"
                     /note="splicing factor, arginine/serine-rich 9"
                     /codon_start=1
                     /product="serine/arginine-rich splicing factor 9"
                     /protein_id="NP_001009255.1"
                     /db_xref="GeneID:288701"
                     /db_xref="RGD:1309495"
                     /translation="MSGWADERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREIE
                     LKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRAYGGRGGWPRASRN
                     GPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEY
                     ALRKLDDTKFRSHEGETSYIRVYPERGTSYGCSRSRSGSRGRDSPYQSRGSPHYFSPF
                     RPY"
     exon            252..412
                     /gene="Srsf9"
                     /gene_synonym="Sfrs9"
                     /inference="alignment:Splign:2.1.0"
     exon            413..585
                     /gene="Srsf9"
                     /gene_synonym="Sfrs9"
                     /inference="alignment:Splign:2.1.0"
     exon            586..1098
                     /gene="Srsf9"
                     /gene_synonym="Sfrs9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccgggctgag gaggcggctg cgggaagtgg gctgcggcgg gcccgcggcg tcgggtggtg
       61 cggatgtcgg gctgggcgga cgagcgcggc ggtgagggcg acgggcgcat ctacgtgggc
      121 aaccttccga ccgacgtgcg tgagaaggac ctcgaggatc tgttttacaa gtacggtcgc
      181 atccgcgaga ttgagctcaa gaaccggcac ggcctcgtgc ccttcgcctt cgtgcgcttc
      241 gaggacccgc gagatgctga ggatgccatc tatggaagaa acggttatga ctacggccag
      301 tgtcgactcc gggtggaatt ccccagggct tacggaggtc ggggagggtg gccccgagcc
      361 tcgaggaacg ggcctcctac aagacgatca gatttccgag ttcttgtttc agggcttcct
      421 ccatccggca gctggcagga cctgaaggat cacatgcgcg aagctgggga tgtctgttac
      481 gcagacgtac agaaggacgg aatggggatg gttgaatatt tgaggaaaga agacatggaa
      541 tatgctctgc ggaaactgga tgacaccaaa ttccgctctc acgagggtga gacttcgtac
      601 atccgggtgt atcctgagag gggcaccagc tatggctgct cgaggtcgcg gtcggggtcc
      661 aggggccgtg actctccata ccaaagccgg ggctcgccac actacttctc tccgttcagg
      721 ccctactgag gaggcggcgg gagggctctc ttcaggtttt tttgaagagc tgagctgctt
      781 tgtgctcagt gtctacattc cagatcgata acttagtgtc ttaggaaagt ccttaatttc
      841 tcctcccccc cccttttttt tttctttttt aaggagctac gtaatttcga ccagagccac
      901 tgtgctagca gggacatgtt ttagactgca gagatagaag tcatggcttt ggttcaggga
      961 caagttgtat atttttcacc cctgattatg ggacagagat cagtgctgca tctttatggg
     1021 ctgctctgct ctggacatca gcagccacac ggccgagtcg cccactgtgt ttagaaatat
     1081 attttaaatg tttagtaaaa aaaaaaaaaa aaaaaaaaaa
//
