LOCUS       NM_001039035            1051 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus serine and arginine rich splicing factor 7
            (Srsf7), mRNA.
ACCESSION   NM_001039035 XM_343003
VERSION     NM_001039035.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1051)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 1051)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 1051)
  AUTHORS   Piekielko-Witkowska,A., Wiszomirska,H., Wojcicka,A., Poplawski,P.,
            Boguslawska,J., Tanski,Z. and Nauman,A.
  TITLE     Disturbed expression of splicing factors in renal cancer affects
            alternative splicing of apoptosis regulators, oncogenes, and tumor
            suppressors
  JOURNAL   PLoS One 5 (10), e13690 (2010)
   PUBMED   21082031
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1051)
  AUTHORS   Tarantino,C., Paolella,G., Cozzuto,L., Minopoli,G., Pastore,L.,
            Parisi,S. and Russo,T.
  TITLE     miRNA 34a, 100, and 137 modulate differentiation of mouse embryonic
            stem cells
  JOURNAL   FASEB J 24 (9), 3255-3263 (2010)
   PUBMED   20439489
REFERENCE   5  (bases 1 to 1051)
  AUTHORS   Wahl,M.C., Will,C.L. and Luhrmann,R.
  TITLE     The spliceosome: design principles of a dynamic RNP machine
  JOURNAL   Cell 136 (4), 701-718 (2009)
   PUBMED   19239890
  REMARK    Review article
REFERENCE   6  (bases 1 to 1051)
  AUTHORS   Chen,Y.I., Moore,R.E., Ge,H.Y., Young,M.K., Lee,T.D. and
            Stevens,S.W.
  TITLE     Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes
            expands the catalog of participating factors
  JOURNAL   Nucleic Acids Res 35 (12), 3928-3944 (2007)
   PUBMED   17537823
REFERENCE   7  (bases 1 to 1051)
  AUTHORS   Wang,J., Gao,Q.S., Wang,Y., Lafyatis,R., Stamm,S. and Andreadis,A.
  TITLE     Tau exon 10, whose missplicing causes frontotemporal dementia, is
            regulated by an intricate interplay of cis elements and trans
            factors
  JOURNAL   J Neurochem 88 (5), 1078-1090 (2004)
   PUBMED   15009664
REFERENCE   8  (bases 1 to 1051)
  AUTHORS   Venables,J.P., Elliott,D.J., Makarova,O.V., Makarov,E.M.,
            Cooke,H.J. and Eperon,I.C.
  TITLE     RBMY, a probable human spermatogenesis factor, and other hnRNP G
            proteins interact with Tra2beta and affect splicing
  JOURNAL   Hum Mol Genet 9 (5), 685-694 (2000)
   PUBMED   10749975
REFERENCE   9  (bases 1 to 1051)
  AUTHORS   Zhang,H., Wada,J., Kanwar,Y.S., Tsuchiyama,Y., Hiragushi,K.,
            Hida,K., Shikata,K. and Makino,H.
  TITLE     Screening for genes up-regulated in 5/6 nephrectomized mouse kidney
  JOURNAL   Kidney Int 56 (2), 549-558 (1999)
   PUBMED   10432394
REFERENCE   10 (bases 1 to 1051)
  AUTHORS   Cavaloc,Y., Popielarz,M., Fuchs,J.P., Gattoni,R. and Stevenin,J.
  TITLE     Characterization and cloning of the human splicing factor 9G8: a
            novel 35 kDa factor of the serine/arginine protein family
  JOURNAL   EMBO J 13 (11), 2639-2649 (1994)
   PUBMED   8013463
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            FM084661.1, FM085512.1, JAXUCZ010000006.1, FM092264.1 and
            FM079490.1.
            
            On Sep 14, 2010 this sequence version replaced NM_001039035.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22399484.1186195.1,
                                           SRR22399492.812506.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-395               FM084661.1         1-395
            396-481             FM085512.1         390-475
            482-516             JAXUCZ010000006.1  20566878-20566912
            517-658             FM092264.1         1-142
            659-667             JAXUCZ010000006.1  20567136-20567144
            668-845             FM079490.1         65-242
            846-1051            FM092264.1         321-526
FEATURES             Location/Qualifiers
     source          1..1051
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q12"
     gene            1..1051
                     /gene="Srsf7"
                     /gene_synonym="Sfrs7"
                     /note="serine and arginine rich splicing factor 7"
                     /db_xref="GeneID:362687"
                     /db_xref="RGD:1307425"
     exon            1..123
                     /gene="Srsf7"
                     /gene_synonym="Sfrs7"
                     /inference="alignment:Splign:2.1.0"
     CDS             96..812
                     /gene="Srsf7"
                     /gene_synonym="Sfrs7"
                     /note="splicing factor, arginine/serine-rich 7, 35kDa"
                     /codon_start=1
                     /product="serine/arginine-rich splicing factor 7"
                     /protein_id="NP_001034124.2"
                     /db_xref="GeneID:362687"
                     /db_xref="RGD:1307425"
                     /translation="MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIAR
                     NPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDP
                     NDRCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSRSASP
                     RRSRSVSLRRSRSASLRRSRSGSIIGSRYFQSRSRSRSRSRSISRPRSSRSKSRSPSP
                     KRSRSPSGSPHRSASPERMD"
     exon            124..304
                     /gene="Srsf7"
                     /gene_synonym="Sfrs7"
                     /inference="alignment:Splign:2.1.0"
     exon            305..481
                     /gene="Srsf7"
                     /gene_synonym="Sfrs7"
                     /inference="alignment:Splign:2.1.0"
     exon            482..556
                     /gene="Srsf7"
                     /gene_synonym="Sfrs7"
                     /inference="alignment:Splign:2.1.0"
     exon            557..667
                     /gene="Srsf7"
                     /gene_synonym="Sfrs7"
                     /inference="alignment:Splign:2.1.0"
     exon            668..721
                     /gene="Srsf7"
                     /gene_synonym="Sfrs7"
                     /inference="alignment:Splign:2.1.0"
     exon            722..757
                     /gene="Srsf7"
                     /gene_synonym="Sfrs7"
                     /inference="alignment:Splign:2.1.0"
     exon            758..1051
                     /gene="Srsf7"
                     /gene_synonym="Sfrs7"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccgggatca ctggcagagg aggttgtgta gccgcttccg tgctactcgc gctgtgagca
       61 ttgcaagcta gagccgagta cgcgggccgg ccatcatgtc acgttacggg cggtatggag
      121 gagaaaccaa ggtatatgtt ggtaacctgg gaactggcgc tggtaaagga gagttagaaa
      181 gggcattcag ttactatggg cccttaagaa ctgtatggat tgccagaaat cctccaggat
      241 ttgcctttgt ggaatttgaa gaccctagag atgcagagga tgcagttcga ggattggatg
      301 ggaaagtgat ttgtggttct cgagtgaggg ttgaattatc aacaggcatg cctcggagat
      361 ctcggtttga taggccacct gcccgtcgtc cctttgatcc taatgataga tgctatgagt
      421 gtggtgaaaa gggacattat gcttatgact gtcatcgcta tagccgacga agaagaagca
      481 ggtcacgatc tagatcacat tcccgatcca ggggaaggcg atactctcgc tcacgtagta
      541 ggagccgcgg taggaggtca agatcagcat ctcctcgacg atcaaggtcc gtgtctcttc
      601 gtagatcaag atcagcttca ctcagaagat ctaggtctgg ttctataata ggatcgaggt
      661 atttccaatc ccgctcaagg tcgagatcaa gatccaggtc tatttcacga ccaagaagca
      721 gccgatcaaa atccagatct ccatctccta aaagaagtcg ttccccatca ggaagtccac
      781 acagaagtgc aagtccagaa agaatggact gaagttctca agttcacccg ttagggaaaa
      841 gttattttgt ttacattatt ataagggatt tgttatgtct gtaaagtgta acctaggaag
      901 gttcatcaac catctaatca aaatggatct ggattattac tctgtaaaat tcacagcagt
      961 aaatattgtt tttgttgaat gtattaacat cttatggtct ggaaatgtag gtttttattt
     1021 gacacattta aataaaatgt ttctaactag a
//
