LOCUS       NM_001135711            2706 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus serine and arginine rich splicing factor 12
            (Srsf12), mRNA.
ACCESSION   NM_001135711 XM_216364
VERSION     NM_001135711.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2706)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 2706)
  AUTHORS   Chen,Y.I., Moore,R.E., Ge,H.Y., Young,M.K., Lee,T.D. and
            Stevens,S.W.
  TITLE     Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes
            expands the catalog of participating factors
  JOURNAL   Nucleic Acids Res 35 (12), 3928-3944 (2007)
   PUBMED   17537823
REFERENCE   3  (bases 1 to 2706)
  AUTHORS   Cowper,A.E., Caceres,J.F., Mayeda,A. and Screaton,G.R.
  TITLE     Serine-arginine (SR) protein-like factors that antagonize authentic
            SR proteins and regulate alternative splicing
  JOURNAL   J Biol Chem 276 (52), 48908-48914 (2001)
   PUBMED   11684676
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Sep 6, 2022 this sequence version replaced NM_001135711.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643295.20822.1,
                                           SRR26643298.26803.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-99                JAXUCZ010000005.1  52403011-52403109
            100-204             JAXUCZ010000005.1  52418336-52418440
            205-308             JAXUCZ010000005.1  52420615-52420718
            309-450             JAXUCZ010000005.1  52420878-52421019
            451-2706            JAXUCZ010000005.1  52425582-52427837
FEATURES             Location/Qualifiers
     source          1..2706
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q21"
     gene            1..2706
                     /gene="Srsf12"
                     /gene_synonym="RGD1561162; Srrp; Srrp35"
                     /note="serine and arginine rich splicing factor 12"
                     /db_xref="GeneID:297962"
                     /db_xref="RGD:1561162"
     exon            1..99
                     /gene="Srsf12"
                     /gene_synonym="RGD1561162; Srrp; Srrp35"
                     /inference="alignment:Splign:2.1.0"
     CDS             35..820
                     /gene="Srsf12"
                     /gene_synonym="RGD1561162; Srrp; Srrp35"
                     /note="35 kDa serine-arginine repressor; serine-arginine
                     repressor protein 35; 35 kDa SR repressor protein;
                     serine-arginine repressor protein (35 kDa)"
                     /codon_start=1
                     /product="serine/arginine-rich splicing factor 12"
                     /protein_id="NP_001129183.1"
                     /db_xref="GeneID:297962"
                     /db_xref="RGD:1561162"
                     /translation="MSRYTRPPNTSLFVRNVADATRPEDLRREFGRYGPIVDVYIPLD
                     FYSRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERH
                     LCSPSDHRRSRSPSQRRSRSRSSSWGRDRRRSDSLKESRHRRSSYSQSKSRSKSLPRQ
                     STSARQSRTPRRNSGSRGRSRSKSLPKRSKSMEKSQSRSPQKQTVSGAKPRSHGRHCD
                     SIARSPCKSPRGYASSGSKTQTTKHSHFRSHSRSRSYHHKNSW"
     exon            100..204
                     /gene="Srsf12"
                     /gene_synonym="RGD1561162; Srrp; Srrp35"
                     /inference="alignment:Splign:2.1.0"
     exon            205..308
                     /gene="Srsf12"
                     /gene_synonym="RGD1561162; Srrp; Srrp35"
                     /inference="alignment:Splign:2.1.0"
     exon            309..450
                     /gene="Srsf12"
                     /gene_synonym="RGD1561162; Srrp; Srrp35"
                     /inference="alignment:Splign:2.1.0"
     exon            451..2706
                     /gene="Srsf12"
                     /gene_synonym="RGD1561162; Srrp; Srrp35"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcggcgggcg gctgggagcg gggccgcgag cggcatgtct cgctacacca ggccccccaa
       61 cacctccctg ttcgtcagga acgtcgcaga cgccaccagg cccgaggact tacgccgtga
      121 gtttggccga tacggcccca tagtagacgt ttatatcccg ctggacttct acagtcgccg
      181 ccccagagga ttcgcttatg ttcagtttga agatgttcgt gatgccgaag atgcacttta
      241 caacctcaac aggaagtggg tatgtggccg gcaaattgag atacagtttg cgcaaggtga
      301 ccgcaaaaca ccaggtcaaa tgaagtcaaa agagcgtcac ctgtgctccc cgagtgacca
      361 caggagatcc agaagcccca gccagaggag atctcgaagc cggagttcct catggggaag
      421 agaccggagg cgctccgata gcctgaaaga gtctcgacac aggcgatctt cttacagtca
      481 gtctaaatct cgttccaaat cactacccag gcagtctacc tcagcgaggc agtcaagaac
      541 accacgaagg aattctggat ctagaggacg atcaagatcc aagtcgctac cgaaaaggtc
      601 caaatcgatg gaaaagtcac agtcacgctc gcctcaaaag cagactgtct cgggagcaaa
      661 acccagatcg cacggacggc actgtgactc catagcaaga tccccatgca agtctcccag
      721 agggtacgcc agttcggggt cgaagacaca gacaacgaaa cattctcact tccggtcaca
      781 ctccagatcc cggagctacc atcataaaaa cagttggtga acagcaactt ccagcagagc
      841 cacagagccc tgctccaagt cgtcacggct catcgtgctt aaaactcttc aaggcttgta
      901 gaaatgcgaa ccggtgttag ttacttccgg catgtgcaag gaataaaatt gccctagctt
      961 tggttaataa atgttttatc tcgatttaag ggctcatcca caactcactc actgtgtgca
     1021 atgtcgcctt tgcatagcct gtacctggtt cacgcggtag cgaggggtac tttccgaaag
     1081 atgttggtaa aacggaacca atgcaaaaat tctacttagg tattaaatac tgtcgacaat
     1141 atcctttaca agaatatttt tatcctaaag cacttttcac ataaaaagta atcgtgactc
     1201 tgtaattgaa taggccagac ttaagctgtt ttgacatcgg tgtctttctt gtgacttctg
     1261 tttaagcctg agccaattcc tggttgatac ttgttcaaat tacagcagtc tgaaatctca
     1321 aaaggtaaaa cttatgaaga ttccacagcc gttcaaaaga tagctaaaag acgcttaaaa
     1381 gataactcaa agaatgttcc attgtttttg aatacaacag cacagaccag ttgacttgag
     1441 attgttatcc atatttgttt aatcggctta cacaaagcca ggtgttgtgg taaatgcctg
     1501 tgatcccagc ccttgggaag gggtaaaacc agcatggacc gggctacatg agaccctgtc
     1561 taaggaaaat aaataaatac tttttgtttt ttgttttttt aaaaaagaga agtaaaacca
     1621 ttttagaagt tctagatttt gaatggcttg agagtactct aaaaattatg gtgtggaaca
     1681 ctcagaatcc acaaaaactc atgttaagcc ttacatattt gaagtatagt acattttgta
     1741 taaatccata tttataccat tatttctata tagctatttt catctgcatt tttcttttta
     1801 gagctctagt tcagtatcct aattatataa aaatctgtta aaaattaaac gcagtacatt
     1861 atattaagaa gtactagcta ctgagatggc ttggtgggga cagccaccct ctcaccatcc
     1921 aaacctggca acctgatagc tagctgggca ccttgagtgc aaactcatgg aagcctcaag
     1981 ggtgactcct gcagactctc tctgacttcc acacttgtac tatggtatgt gtgcacatgc
     2041 agacacacac acacacacac acacacacac acacacacac aaacacacga aagagagagg
     2101 ggaaaggaga gaaaaggaag gaaagaatgg gaaggaaaga aagaaaaaga aagaaagaaa
     2161 gaaaaggtct ctattaaaca gctttaaggt atttgacttt tactctacat tttttaaacc
     2221 aaataacttt gttgacaatt gttgcttttg tattgttgta acttagaatt tctttcacaa
     2281 tgtgtttgag gtttacattc agagagtttt agtagatctg tgatcaaaaa tggtttgcat
     2341 atacttgtca aagagatatg tttacagatt tactctgtta gatctcatta ctgaaacaca
     2401 ctcggtcctt acagctaata tttatgcctg gaatacctaa gaaacttgtc ttacattttc
     2461 agtatttgga gccatgtcgc ttctattaat ttcaaatata aagttccatt ttcctttgca
     2521 ttttaaatcc tctatgtgag aaacaacttt acaaaataat ttgtacattg gtgatctttg
     2581 gagaagtacc acaaattgat gtatattata ctccctgaat atattttctc tatttaacca
     2641 tagcaaaagt tatttatttc gaaagttcac tctggtgttc ctctgtaata aagcaattat
     2701 aacgga
//
