LOCUS       NM_001399822            2631 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus serine and arginine rich splicing factor 11
            (Srsf11), mRNA.
ACCESSION   NM_001399822 XM_006233541
VERSION     NM_001399822.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2631)
  AUTHORS   Wang,H., Wen,J., Chang,C.C. and Zhou,X.
  TITLE     Discovering transcription and splicing networks in myelodysplastic
            syndromes
  JOURNAL   PLoS One 8 (11), e79118 (2013)
   PUBMED   24244432
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2631)
  AUTHORS   Stamova,B.S., Tian,Y., Nordahl,C.W., Shen,M.D., Rogers,S.,
            Amaral,D.G. and Sharp,F.R.
  TITLE     Evidence for differential alternative splicing in blood of young
            boys with autism spectrum disorders
  JOURNAL   Mol Autism 4 (1), 30 (2013)
   PUBMED   24007566
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2631)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   4  (bases 1 to 2631)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   5  (bases 1 to 2631)
  AUTHORS   Chen,Y.I., Moore,R.E., Ge,H.Y., Young,M.K., Lee,T.D. and
            Stevens,S.W.
  TITLE     Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes
            expands the catalog of participating factors
  JOURNAL   Nucleic Acids Res 35 (12), 3928-3944 (2007)
   PUBMED   17537823
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Jan 14, 2022 this sequence version replaced XM_006233541.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22399484.1669179.1,
                                           SRR26643297.10212.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-91                JAXUCZ010000002.1  249760168-249760258 c
            92-288              JAXUCZ010000002.1  249752720-249752916 c
            289-422             JAXUCZ010000002.1  249748600-249748733 c
            423-532             JAXUCZ010000002.1  249744649-249744758 c
            533-625             JAXUCZ010000002.1  249743700-249743792 c
            626-675             JAXUCZ010000002.1  249743149-249743198 c
            676-803             JAXUCZ010000002.1  249741267-249741394 c
            804-885             JAXUCZ010000002.1  249739757-249739838 c
            886-1017            JAXUCZ010000002.1  249738223-249738354 c
            1018-1107           JAXUCZ010000002.1  249736240-249736329 c
            1108-1203           JAXUCZ010000002.1  249735310-249735405 c
            1204-1342           JAXUCZ010000002.1  249734856-249734994 c
            1343-2631           JAXUCZ010000002.1  249733464-249734752 c
FEATURES             Location/Qualifiers
     source          1..2631
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q45"
     gene            1..2631
                     /gene="Srsf11"
                     /gene_synonym="Sfrs11"
                     /note="serine and arginine rich splicing factor 11"
                     /db_xref="GeneID:502603"
                     /db_xref="RGD:1559953"
     exon            1..91
                     /gene="Srsf11"
                     /gene_synonym="Sfrs11"
                     /inference="alignment:Splign:2.1.0"
     CDS             2..1537
                     /gene="Srsf11"
                     /gene_synonym="Sfrs11"
                     /note="splicing factor, arginine/serine-rich 11"
                     /codon_start=1
                     /product="serine/arginine-rich splicing factor 11"
                     /protein_id="NP_001386751.1"
                     /db_xref="GeneID:502603"
                     /db_xref="RGD:1559953"
                     /translation="MSSPPAPGAAGPPSPSVALTNLALRRNFFREAARAMSNTAVVPS
                     APGPGPGPSGGPGGGTEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPV
                     SSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKALSLLAPANAVA
                     GLLPGGGLLPTPNPLTQIGAVPLAALGAPALDPALAALGLPGTNLNSQSLAADQLLKL
                     MSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEKRRH
                     SRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSRS
                     TSKARDKKKEDKEKKRSKTPPKSYSTARRSRSASRERRRRRSRSGTRSPKKPRSPKRK
                     LSRSPSPRRHKKEKKKDKDKERSRDERERSTSKKKRSKDKEKERERKSESDKDVKQVT
                     RDYDEEEQGYDSEKEKKEEKRPTEAVSPKAKECSVEKGVGDLRESKVNGDDHHEEDMD
                     MSD"
     exon            92..288
                     /gene="Srsf11"
                     /gene_synonym="Sfrs11"
                     /inference="alignment:Splign:2.1.0"
     exon            289..422
                     /gene="Srsf11"
                     /gene_synonym="Sfrs11"
                     /inference="alignment:Splign:2.1.0"
     exon            423..532
                     /gene="Srsf11"
                     /gene_synonym="Sfrs11"
                     /inference="alignment:Splign:2.1.0"
     exon            533..625
                     /gene="Srsf11"
                     /gene_synonym="Sfrs11"
                     /inference="alignment:Splign:2.1.0"
     exon            626..675
                     /gene="Srsf11"
                     /gene_synonym="Sfrs11"
                     /inference="alignment:Splign:2.1.0"
     exon            676..803
                     /gene="Srsf11"
                     /gene_synonym="Sfrs11"
                     /inference="alignment:Splign:2.1.0"
     exon            804..885
                     /gene="Srsf11"
                     /gene_synonym="Sfrs11"
                     /inference="alignment:Splign:2.1.0"
     exon            886..1017
                     /gene="Srsf11"
                     /gene_synonym="Sfrs11"
                     /inference="alignment:Splign:2.1.0"
     exon            1018..1107
                     /gene="Srsf11"
                     /gene_synonym="Sfrs11"
                     /inference="alignment:Splign:2.1.0"
     exon            1108..1203
                     /gene="Srsf11"
                     /gene_synonym="Sfrs11"
                     /inference="alignment:Splign:2.1.0"
     exon            1204..1342
                     /gene="Srsf11"
                     /gene_synonym="Sfrs11"
                     /inference="alignment:Splign:2.1.0"
     exon            1343..2631
                     /gene="Srsf11"
                     /gene_synonym="Sfrs11"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gatgtcgtca ccgccagctc ccggggccgc aggaccgccg agcccttccg ttgccctcac
       61 caacctcgca ctgaggagaa acttttttcg ggaggcagcc cgcgccatga gcaacacggc
      121 agtggtcccc agcgcgccag gcccgggccc gggccccagt ggcgggccgg gcggcggcac
      181 cgaggtgatc caggtgacca acgtgtcccc gagcgccagc tcagagcaga tgcggacgct
      241 cttcggcttc ctgggcaaga tcgacgagct gcgcctcttc ccgccggatg actcaccttt
      301 gccagtctcc tctcgtgtct gctttgttaa gttccatgat ccagactcag cagttgtggc
      361 acagcatctg acaaacactg tgttcgttga cagagctttg atagtcgtac catatgctga
      421 aggagttatt cctgatgaga ctaaggcttt gtctctattg gcaccagcta atgcagtggc
      481 aggtcttctg cctggtggtg gactcctgcc tacccccaac ccacttaccc agattggcgc
      541 tgttcccctg gctgcattgg gagctccagc tcttgatcct gcccttgctg ctcttgggct
      601 tccaggaaca aacttgaact ctcagtccct tgctgcagac cagctattga agcttatgag
      661 tactgttgat cccaaattga atcatgtagc agctggtctt gtttcaccaa gtttgaagtc
      721 agacacctct agtaaagaaa tagaggaagc catgaagaga gtgcgtgaag ctcagtccct
      781 gatatctgcc gctattgagc cagacaagaa ggaagaaaag agaagacatt cgagatcaag
      841 gtcacgctcc aggaggagga ggaccccctc atcctccaga cacaggcggt cacgaagccg
      901 gtcaaggagg cggtcacact ccaagtccag gagtagaagg agatccaaaa gtccaagacg
      961 gagacgatct cattcgagag agaggggtag aaggtcaagg agcacatcca aagccagaga
     1021 caaaaagaaa gaagataaag aaaaaaaacg ttccaaaact ccaccaaaaa gctacagcac
     1081 agccagacgc tctcggagtg caagcagaga gagaagacga cggcgaagta ggagtggtac
     1141 aaggtcccct aaaaagccca gatctcctaa aagaaagctg tcccgctcac catccccaag
     1201 gagacataaa aaagagaaga agaaagataa ggacaaagaa agaagcagag atgaaaggga
     1261 gcgatcaaca agtaagaaga agaggagcaa agacaaggag aaggaacgag aaaggaagtc
     1321 tgagagtgac aaggatgtca aacaggtgac tcgggattat gatgaagagg agcaaggcta
     1381 tgacagtgag aaggaaaaga aagaggagaa gagaccaaca gaagcagtgt cccctaaagc
     1441 aaaggagtgc tctgtggaga agggggtggg cgaccttcga gagtccaaag tgaatgggga
     1501 tgatcaccac gaagaagaca tggatatgag tgactgagcc caaggctggc tgcagatggg
     1561 cctcagtgtc attccttgtg atccctaatg ctgtgtgtgt tcatctcacc taggtgtata
     1621 cagctgcaca ttaccaatgg ctgcagaaca cccaatcatg acctctagtg ctttatagca
     1681 aaagctgtaa agtggtacct gggtgaccag cattgccatg gttacatcca tttgcgtaat
     1741 caagcagctg tgcaactgct gcttctaaca gatgaacagc tgcatgcatc tccagcaggc
     1801 atggattgtc tcttgtctat gatcctcagt gcgttcactt agagtatttc tagagtttga
     1861 gtccttgccg tgatagagcc atgtagggaa tgcactgatt gcatgttacc ccaagcgtca
     1921 tgaaaccttc cgacacggtg acctatttaa tggtcttgtt tgttgacatg acaaattaac
     1981 attcttagag ttacatctcg aaaaaagcat ttgtgataga taagcccttt gagccttgtg
     2041 gctaaatttt tgtggctttg tttaactttc aaaggttata tatgcactaa ccttttttga
     2101 tggctaagta ggctttaaat tacagtaaaa ttttttcaaa taaaactggc tgtaaaatat
     2161 attttgaatt agagttgttc actttttcat agctacttat gtttttttcc caataattta
     2221 tttcacatct ctaccagtga acgcagccca tcactagaaa atgaccttgt cctgattttc
     2281 agttttcaac tattagtttt aaagctcact gttgaataag aggaagtggt ggtgcatttt
     2341 aaattgactt tcatgtgctt ttaaaatatg acagatctcc ttgataatgt acttttattt
     2401 gatctcaagt tgtataaaac caataaattt gtgttacttt gattgcagta gtatcttatg
     2461 catagtgatt ccatgttata tgcagactag ttaggcaact gttttcttag ttacaagctt
     2521 cacttttgtg cagttaaaaa aacaaaagta ggctacagtc tgtgccatgt tgatgtacag
     2581 tttctgaaat tgttttacaa gactttgata ataaaaccct taaactcaca a
//
