LOCUS       NM_001399222            1114 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus serine and arginine rich splicing factor 10
            (Srsf10), transcript variant 1, mRNA.
ACCESSION   NM_001399222 XM_006239221
VERSION     NM_001399222.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1114)
  AUTHORS   Xiao,W., Adhikari,S., Dahal,U., Chen,Y.S., Hao,Y.J., Sun,B.F.,
            Sun,H.Y., Li,A., Ping,X.L., Lai,W.Y., Wang,X., Ma,H.L., Huang,C.M.,
            Yang,Y., Huang,N., Jiang,G.B., Wang,H.L., Zhou,Q., Wang,X.J.,
            Zhao,Y.L. and Yang,Y.G.
  TITLE     Nuclear m(6)A Reader YTHDC1 Regulates mRNA Splicing
  JOURNAL   Mol Cell 61 (4), 507-519 (2016)
   PUBMED   26876937
  REMARK    Erratum:[Mol Cell. 2016 Mar 17;61(6):925]
REFERENCE   2  (bases 1 to 1114)
  AUTHORS   Karunakaran,D.K., Banday,A.R., Wu,Q. and Kanadia,R.
  TITLE     Expression analysis of an evolutionarily conserved alternative
            splicing factor, Sfrs10, in age-related macular degeneration
  JOURNAL   PLoS One 8 (9), e75964 (2013)
   PUBMED   24098751
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1114)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   4  (bases 1 to 1114)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   5  (bases 1 to 1114)
  AUTHORS   Wahl,M.C., Will,C.L. and Luhrmann,R.
  TITLE     The spliceosome: design principles of a dynamic RNP machine
  JOURNAL   Cell 136 (4), 701-718 (2009)
   PUBMED   19239890
  REMARK    Review article
REFERENCE   6  (bases 1 to 1114)
  AUTHORS   Peng,Z.Y., Lee,S.C. and Chen,X.H.
  TITLE     The expression and distribution of neural salient
            serine/arginine-rich protein 1 in rat retina
  JOURNAL   Neuroreport 18 (16), 1641-1644 (2007)
   PUBMED   17921860
REFERENCE   7  (bases 1 to 1114)
  AUTHORS   Chen,Y.I., Moore,R.E., Ge,H.Y., Young,M.K., Lee,T.D. and
            Stevens,S.W.
  TITLE     Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes
            expands the catalog of participating factors
  JOURNAL   Nucleic Acids Res 35 (12), 3928-3944 (2007)
   PUBMED   17537823
REFERENCE   8  (bases 1 to 1114)
  AUTHORS   Cowper,A.E., Caceres,J.F., Mayeda,A. and Screaton,G.R.
  TITLE     Serine-arginine (SR) protein-like factors that antagonize authentic
            SR proteins and regulate alternative splicing
  JOURNAL   J Biol Chem 276 (52), 48908-48914 (2001)
   PUBMED   11684676
REFERENCE   9  (bases 1 to 1114)
  AUTHORS   Yang,L., Embree,L.J., Tsai,S. and Hickstein,D.D.
  TITLE     Oncoprotein TLS interacts with serine-arginine proteins involved in
            RNA splicing
  JOURNAL   J Biol Chem 273 (43), 27761-27764 (1998)
   PUBMED   9774382
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Jan 5, 2022 this sequence version replaced XM_006239221.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ093909.1, FQ082420.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-215               JAXUCZ010000005.1  153372316-153372530
            216-320             JAXUCZ010000005.1  153374755-153374859
            321-424             JAXUCZ010000005.1  153378153-153378256
            425-587             JAXUCZ010000005.1  153379619-153379781
            588-638             JAXUCZ010000005.1  153380114-153380164
            639-1114            JAXUCZ010000005.1  153380297-153380772
FEATURES             Location/Qualifiers
     source          1..1114
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..1114
                     /gene="Srsf10"
                     /gene_synonym="Fusip1"
                     /note="serine and arginine rich splicing factor 10"
                     /db_xref="GeneID:362630"
                     /db_xref="RGD:1311067"
     exon            1..215
                     /gene="Srsf10"
                     /gene_synonym="Fusip1"
                     /inference="alignment:Splign:2.1.0"
     CDS             151..936
                     /gene="Srsf10"
                     /gene_synonym="Fusip1"
                     /note="isoform 1 is encoded by transcript variant 1; FUS
                     interacting protein (serine/arginine-rich) 1;
                     serine/arginine-rich splicing factor 10"
                     /codon_start=1
                     /product="serine/arginine-rich splicing factor 10 isoform
                     1"
                     /protein_id="NP_001386151.1"
                     /db_xref="GeneID:362630"
                     /db_xref="RGD:1311067"
                     /translation="MSRYLRPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLD
                     FYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGR
                     NVYSSSRYDDYDRYRRSRSRSYERRRSRSRSFDYNYRRSYSPRNRPTGRPRRSRSHSD
                     NDRFKHRNRSFSRSKSNSRSRSKSQPKKEMKAKSRSRSASHTKTRGTSKTDSKTHYKS
                     GSRYEKESRKKEPPRSKSQSRSQSRSRSKSRSRSWTSPKSSGH"
     exon            216..320
                     /gene="Srsf10"
                     /gene_synonym="Fusip1"
                     /inference="alignment:Splign:2.1.0"
     exon            321..424
                     /gene="Srsf10"
                     /gene_synonym="Fusip1"
                     /inference="alignment:Splign:2.1.0"
     exon            425..587
                     /gene="Srsf10"
                     /gene_synonym="Fusip1"
                     /inference="alignment:Splign:2.1.0"
     exon            588..638
                     /gene="Srsf10"
                     /gene_synonym="Fusip1"
                     /inference="alignment:Splign:2.1.0"
     exon            639..1114
                     /gene="Srsf10"
                     /gene_synonym="Fusip1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggagcgaag tctcgcgaga agaggcagtt gccgtagcgg agccctctgg gtctgtgcga
       61 gtgagtgagt ggatgtgagc cgccgccgcc ggagctgcgg acggtttgcc gagcccgtta
      121 gcgccgctgg cccagagccc cgccgccgtc atgtcccgat acctgcgccc ccccaacacg
      181 tctctgttcg tcagaaacgt ggcggacgac accaggtctg aagatttacg tcgggaattt
      241 ggtcgttatg gtccaatagt agatgtttat gttccacttg atttctacac tcgacgtcca
      301 agaggatttg catatgttca atttgaggat gttcgtgatg ctgaagatgc tttacataat
      361 ttggacagaa aatggatttg tgggcgtcaa attgaaatac agttcgcaca gggggatcgg
      421 aagacaccaa atcaaatgaa agccaaggaa gggaggaatg tatacagctc ttcacgatac
      481 gacgattatg accgatatag acgttctcga agccgaagtt atgaaaggag gagatcaagg
      541 agtcggtcct ttgattataa ctataggaga tcttacagtc ctagaaatag accgactgga
      601 agaccacggc gtagccgaag ccattccgac aatgatagat tcaaacaccg aaatcgatct
      661 ttttcaagat ctaaatccaa ttcaagatca cggtccaagt cccagcccaa gaaagaaatg
      721 aaggctaaat cacgttctag gtctgcatct cacaccaaaa ctagaggcac ctctaaaaca
      781 gattccaaaa cacattataa gtctggctca agatatgaaa aggaatcaag gaaaaaagaa
      841 ccacctagat ccaaatctca gtcaagatca cagtctaggt ctaggtcaaa atctagatca
      901 aggtcttgga ctagtcccaa gtccagtggc cactgatagt ataaatcatg atacttctag
      961 gcatgtatca ttcatttact catagtttgg tatacttaaa ttatcaggaa tacaatgttg
     1021 caatgatgcg tttaaaaaca aacaaactta acttgttagt tttccctgta ctgggcaatg
     1081 gttataatta aaatgatatg ctgttgagaa gcca
//
