LOCUS       XM_039090058            3046 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus serrate, RNA effector molecule (Srrt),
            transcript variant X1, mRNA.
ACCESSION   XM_039090058
VERSION     XM_039090058.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 24, 2024 this sequence was replaced by
            NM_001427441.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3046
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3046
                     /gene="Srrt"
                     /note="serrate, RNA effector molecule; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 59 ESTs, 4 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 239 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:686980"
                     /db_xref="RGD:1591241"
     CDS             298..2922
                     /gene="Srrt"
                     /codon_start=1
                     /product="serrate RNA effector molecule homolog isoform
                     X1"
                     /protein_id="XP_038945986.1"
                     /db_xref="GeneID:686980"
                     /db_xref="RGD:1591241"
                     /translation="MGDSDDEYDRRRRDKFRRERSDYDRSRERDERRRGDDWNDREWD
                     RGRERRSRGEYRDYDRNRRERFSPPRHELSPPQKRMRRDWDEHSSDPYHSGYDMPYAG
                     GGGGPTYGPPQPWGHPDVHIMQHHVLPIQARLGSIAEIDLGVPPPIMKSFKEFLLSLD
                     DSVDETEAVKRYNDYKLDFRRQQMQDFFLAHKDEEWFRSKYHPDEVGKRRQEARGALQ
                     NRLKVFLSLMETGWFDNLLLDIDKADAIVKMLDAAVIKMEGGTEHDLRILEQEEEEEQ
                     AGKTGETSKKEEGRAGPAPGDGERKVNDKDEKKEDGKQAENDSSNDDKTKKPEGDGDK
                     EEKKEEAEKEAKKSKKRNRKHSGDDSFDEGSVSESESESESGQAEEEKEEAEEALKEK
                     EKPKEEEREKPKDTAGLECKPRPLHKTCSLFMRNIAPNISRAEIISLCKRYPGFMRVA
                     LSEPQPERRFFRRGWVTFDRSVNIKEICWNLQNIRLRECELSPGVNRDLTRRVRNING
                     ITQHKQIVRNDIKLAAKLIHTLDDRTQLWASEPGTPPAPTSLPSQNPILKNITDYLIE
                     EVSAEEEELLGSSGGPPPEEPPKEGNPAEINVERDEKLIKVLDKLLLYLRIVHSLDYY
                     NTCEYPNEDEMPNRCGIIHVRGPMPPNRVSHGEVLEWQKTFEEKLTPLLSVRESLSEE
                     EAQKMGRKDPEQEVEKFVTSNTQELGKDKWLCPLSGKKFKGPEFVRKHIFNKHAEKIE
                     EVKKEVAFFNNFLTDAKRPALPEIKPAQPPGPAQILPPGLTPGLPYPHQTPQGLMPYG
                     QPRPPILGYGAGAVRPAVPTGGPPYPHAPYGAGRGNYDAFRGQGYPGKPRNRMVRGDP
                     RAIVEYRDLDAPDDVDFF"
ORIGIN      
        1 gcgtctccac ccttttcccg tcattccttt aatcgctctt agttttagtt tggtcggggg
       61 tcttgtttgt agttggaggc cgagctccgt gggtgacgta agctgcgcgc gcgactcctc
      121 taaccctccg cggtcccgct ctcatctttc cattcgcctc tgggctaaga atccctgcgt
      181 ctccttcaaa ccctctttgc ggtccattgt cgcgcgttcc ggtccgcccg gaaaacaagc
      241 ccgccggcgc gcgcttccaa cggccccgac cgctgccagg cctcctctga cagcaccatg
      301 ggtgacagtg atgatgaata cgatcgaaga cgcagggaca aatttcgaag ggagcgcagt
      361 gactatgacc gttcccggga aagagatgaa agacggcgag gggacgattg gaatgaccga
      421 gagtgggacc gtggtcgtga gcgccgcagt cggggtgaat atcgagacta tgataggaac
      481 cgaagggagc gcttctctcc ccctcgacac gaacttagtc ccccacagaa gcgcatgcgg
      541 agagactggg atgagcacag ctctgaccca taccacagtg gctatgacat gccttatgct
      601 ggggggggtg ggggaccaac ttacggcccc cctcagccct ggggccaccc agacgtccac
      661 atcatgcagc accatgtcct gcctatccag gccaggctgg gcagcattgc tgagattgac
      721 ttgggtgtgc cgccacctat aatgaagtcc ttcaaggaat tcctcctgtc tctggatgac
      781 tctgtggatg agaccgaggc agtcaaacgc tacaatgact acaagctgga cttccggagg
      841 cagcagatgc aggatttttt cctggctcat aaagatgagg agtggttccg atcgaagtac
      901 caccccgatg aggtggggaa gcggcggcag gaggcccggg gggccctgca gaaccgactg
      961 aaggtgttcc tgtccctcat ggagactggc tggtttgata accttctctt ggacatagac
     1021 aaagctgacg ctatcgtcaa gatgctagat gcagctgtca ttaagatgga aggtggcaca
     1081 gagcacgatc tccgcatttt ggagcaggaa gaggaggagg aacaggcagg caagactggg
     1141 gagaccagca agaaagagga gggccgagct ggaccagccc cgggggatgg agagcgcaag
     1201 gtcaacgata aggatgagaa gaaagaagat ggaaaacagg ctgaaaatga cagttccaac
     1261 gatgacaaaa ctaagaaacc tgagggtgat ggggacaagg aggagaagaa agaagaggct
     1321 gagaaggaag ccaaaaagag caagaagcgg aacaggaagc acagtggtga tgacagcttc
     1381 gatgagggca gtgtatccga gtctgagtct gagtctgaga gtggccaggc tgaggaggag
     1441 aaagaggagg ctgaagaggc acttaaagaa aaggagaagc ccaaagaaga ggagcgggag
     1501 aagcctaagg atactgcagg gctggagtgt aagccccggc ccttgcataa gacttgctct
     1561 ctcttcatgc gcaacattgc gcccaacatc tcaagggcag agatcatttc tctttgtaaa
     1621 agatacccag gctttatgcg agtggcactg tcagagcccc agccagagag gaggtttttc
     1681 cgccgtggct gggtgacttt tgaccgcagt gttaacatta aggagatatg ttggaacctg
     1741 cagaacatac gactccggga gtgtgaactg agtcccggtg tgaacagaga cctgactcgt
     1801 cgtgtccgca acatcaatgg cattacacag cacaagcaga tagtgcgaaa tgacatcaag
     1861 ttggcagcca agctgatcca cacactggat gacaggactc agctctgggc ctctgagcct
     1921 gggacgcctc ctgcgcccac aagcctgccc tctcaaaacc ccatcctgaa gaacatcacc
     1981 gactatctga ttgaggaagt gagcgctgag gaggaggagc tcctggggag cagtggagga
     2041 cccccgcccg aggagcctcc caaggaaggc aaccctgcag agatcaatgt ggagagggat
     2101 gagaagctga tcaaggtctt ggataaactt cttctctact tgcgtattgt gcactctctg
     2161 gattattata acacctgtga gtaccctaat gaggacgaga tgccaaaccg ctgtggcata
     2221 atccacgttc gggggcccat gcctcccaac cgagtcagcc acggagaagt gctggagtgg
     2281 cagaagactt tcgaggagaa gctgaccccg ctgctgagtg tgcgcgaatc cctttctgag
     2341 gaagaggccc agaagatggg ccggaaagac ccagagcagg aagtggagaa gtttgtcacc
     2401 tccaatacac aggaactggg caaggataag tggctatgtc ctctcagtgg caagaaattc
     2461 aagggtccag agtttgtgcg caaacatatc ttcaataagc acgctgagaa gatcgaggag
     2521 gtgaagaagg aggtggcgtt cttcaacaac ttcctcacag atgccaagcg cccagctttg
     2581 cctgagatca agccagctca gccacctggc cctgcccaga tactcccccc aggcctgacc
     2641 ccaggacttc cctatccaca tcagacacca cagggcttga tgccctatgg tcagccccgg
     2701 cctcccatct tgggctatgg agctggtgct gtccgccctg cagtcccaac aggagggcct
     2761 ccataccccc atgctccata tggtgccggc cgtgggaact atgatgcttt tcgaggccaa
     2821 ggttatcctg ggaaacctcg gaacaggatg gttcgaggag acccaagggc tatagtggag
     2881 tatcgcgacc tggatgcccc ggatgacgtt gatttctttt gaaccagcca cgtcccctca
     2941 ttctgcatcg ctgcatctgt acctgtgacc tctttatcct atcagctgag aatttttttg
     3001 tacgttattt tacctgctag taaacaactt gagtactgtg tgttaa
//
