LOCUS       NM_001107986            3665 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus serine and arginine repetitive matrix 1 (Srrm1),
            mRNA.
ACCESSION   NM_001107986 XM_001069368 XM_233556
VERSION     NM_001107986.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3665)
  AUTHORS   Lapolla,A., Porcu,S., Roverso,M., Desoye,G., Cosma,C.,
            Nardelli,G.B., Bogana,G., Carrozzini,M. and Traldi,P.
  TITLE     A preliminary investigation on placenta protein profile reveals
            only modest changes in well controlled gestational diabetes
            mellitus
  JOURNAL   Eur J Mass Spectrom (Chichester) 19 (3), 211-223 (2013)
   PUBMED   24308201
REFERENCE   2  (bases 1 to 3665)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 3665)
  AUTHORS   Chen,Y.I., Moore,R.E., Ge,H.Y., Young,M.K., Lee,T.D. and
            Stevens,S.W.
  TITLE     Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes
            expands the catalog of participating factors
  JOURNAL   Nucleic Acids Res 35 (12), 3928-3944 (2007)
   PUBMED   17537823
REFERENCE   4  (bases 1 to 3665)
  AUTHORS   Tange,T.O., Nott,A. and Moore,M.J.
  TITLE     The ever-increasing complexities of the exon junction complex
  JOURNAL   Curr Opin Cell Biol 16 (3), 279-284 (2004)
   PUBMED   15145352
  REMARK    Review article
REFERENCE   5  (bases 1 to 3665)
  AUTHORS   Jurica,M.S., Licklider,L.J., Gygi,S.R., Grigorieff,N. and
            Moore,M.J.
  TITLE     Purification and characterization of native spliceosomes suitable
            for three-dimensional structural analysis
  JOURNAL   RNA 8 (4), 426-439 (2002)
   PUBMED   11991638
REFERENCE   6  (bases 1 to 3665)
  AUTHORS   Sutherland,H.G., Mumford,G.K., Newton,K., Ford,L.V., Farrall,R.,
            Dellaire,G., Caceres,J.F. and Bickmore,W.A.
  TITLE     Large-scale identification of mammalian proteins localized to
            nuclear sub-compartments
  JOURNAL   Hum Mol Genet 10 (18), 1995-2011 (2001)
   PUBMED   11555636
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC166715.1.
            
            On Jul 25, 2008 this sequence version replaced NM_001107986.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC166715.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..3665
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..3665
                     /gene="Srrm1"
                     /note="serine and arginine repetitive matrix 1"
                     /db_xref="GeneID:313620"
                     /db_xref="RGD:1311258"
     exon            1..47
                     /gene="Srrm1"
                     /inference="alignment:Splign:2.1.0"
     CDS             27..2753
                     /gene="Srrm1"
                     /note="serine/arginine repetitive matrix 1"
                     /codon_start=1
                     /product="serine/arginine repetitive matrix protein 1"
                     /protein_id="NP_001101456.2"
                     /db_xref="GeneID:313620"
                     /db_xref="RGD:1311258"
                     /translation="MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMSKVN
                     LEVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFM
                     GELWPLLLSAQENIAGIPSAFLELKKEEIKQRQIEQEKLASLKKQDEDKDKRDKEEKE
                     SSREKRERSRSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPEKKE
                     KSPELPEPSVRMKDSSVQEATSTSDILKAPKPEPVPEPKEPSPEKNSKKEKEKTRPRS
                     RSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPP
                     RHRRSRSPGRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASP
                     PRRRHRPSSPATPPPKTRHSPTPQQSNRARKSRVSVSPGRTSGKVTKHKGTEKRESPS
                     PAPKPRKVELSESEEDKGSKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRS
                     HVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRSRRRRSPSPPPARRRRSPSPAPPPP
                     PPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPP
                     PKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQP
                     NKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAA
                     SPSPQSVRRVSSSRSVSGSPEPTAKKPPAPPSPVQSQSPSTNWSPAAPAKKAKSPTPS
                     PSPARNSDQEGGGKKKKKKKDKKHKKDKKHKKHKKHKKEKAVAVATPAPAAPAAVSAA
                     ATPSAQEEPAAAPEPRKETESEAEDDNLDDLERHLREKALRSMRKAQVSPQS"
     exon            48..137
                     /gene="Srrm1"
                     /inference="alignment:Splign:2.1.0"
     exon            138..260
                     /gene="Srrm1"
                     /inference="alignment:Splign:2.1.0"
     exon            261..431
                     /gene="Srrm1"
                     /inference="alignment:Splign:2.1.0"
     exon            432..547
                     /gene="Srrm1"
                     /inference="alignment:Splign:2.1.0"
     exon            548..751
                     /gene="Srrm1"
                     /inference="alignment:Splign:2.1.0"
     exon            752..940
                     /gene="Srrm1"
                     /inference="alignment:Splign:2.1.0"
     exon            941..1060
                     /gene="Srrm1"
                     /inference="alignment:Splign:2.1.0"
     exon            1061..1335
                     /gene="Srrm1"
                     /inference="alignment:Splign:2.1.0"
     exon            1336..1416
                     /gene="Srrm1"
                     /inference="alignment:Splign:2.1.0"
     exon            1417..1503
                     /gene="Srrm1"
                     /inference="alignment:Splign:2.1.0"
     exon            1504..1648
                     /gene="Srrm1"
                     /inference="alignment:Splign:2.1.0"
     exon            1649..1777
                     /gene="Srrm1"
                     /inference="alignment:Splign:2.1.0"
     exon            1778..2239
                     /gene="Srrm1"
                     /inference="alignment:Splign:2.1.0"
     exon            2240..2435
                     /gene="Srrm1"
                     /inference="alignment:Splign:2.1.0"
     exon            2436..2645
                     /gene="Srrm1"
                     /inference="alignment:Splign:2.1.0"
     exon            2646..3625
                     /gene="Srrm1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagcgatctc cgagcgaggc agcaagatgg acgcgggatt cttccgcgga acaagtgcgg
       61 agcaggataa tcgattcagc aacaaacaga agaaactcct caagcagctg aaatttgcag
      121 aatgtctaga aaaaaaggtg gacatgagca aagtaaattt ggaggttata aagccttgga
      181 taacaaaaag agtgactgag atccttggat tcgaagatga tgttgtgatt gagtttatat
      241 tcaaccagct ggaagtgaag aacccagatt ccaaaatgat gcaaatcaac ctgactggat
      301 ttttgaatgg gaagaatgct agagagttca tgggagaact gtggcctctg ctgttaagtg
      361 cacaagaaaa tatcgccgga atcccttctg ctttcctaga gttgaagaag gaagagataa
      421 agcagagaca aattgaacaa gaaaaattgg cgtctctgaa aaaacaagat gaagataaag
      481 ataagaggga taaggaagaa aaagaaagca gcagagagaa gagggagcgg tctcgcagcc
      541 caagaagacg caaatccaga tctccttccc ctagaagacg atcttcccct gtcaggagag
      601 agagaaagcg cagtcactct cgatctcccc gtcacagaac caagagccgg agcccttccc
      661 ctgccccaga aaagaaggag aaatctccag agctcccaga accatcagtg agaatgaaag
      721 actcttcagt acaagaggcc acatctacaa gtgacatctt gaaagctccc aagcctgagc
      781 ctgtaccaga gcccaaagaa ccatctccag aaaaaaattc caaaaaggaa aaggaaaaga
      841 ctcgaccaag atctcggtca cgttccaaat cacggtcccg gactcgttct cggtcacctt
      901 ctcatacgag acccagacgg cgacatagat cccgatcaag atcatactct cctagaaggc
      961 gaccaagccc cagacgacga ccatctcccc gaagaagaac tccaccaaga cggatgcctc
     1021 ctccaccacg gcacaggagg agtaggtctc cagggagacg aaggagacgt tcttccgcat
     1081 cgctgtctgg aagtagctcg tcgtcctctt catctcgttc ccggtcaccg ccaaagaagc
     1141 ctcccaagag gacatccagc cctcctcgga aaactcgtag gttatcacct tcggcaagtc
     1201 ctccgaggcg aaggcaccgg ccgtcatctc cagcaactcc gccacccaaa actcgccatt
     1261 ccccaactcc ccagcagtca aaccgtgcaa gaaaaagtcg tgtgtctgtg tctccaggaa
     1321 gaacctcggg taaagtgaca aaacataaag gcactgagaa aagagagtca ccttctccag
     1381 cacccaagcc tagaaaagtg gagctgtctg agtctgagga agacaaaggc agcaaaatgg
     1441 ctgcagctga ttctgtgcag cagaggcgac aatatagacg acagaaccag cagtcttcat
     1501 ctgactctgg ctcctcttcc acctcagaag atgagcggcc caagagatcc catgtgaaga
     1561 atggtgaggt aggcaggcgg cggagacatt ctccttctcg gagtgcctct ccatcacctc
     1621 gaaagcgcca aaaagagact tcccctcgta gtagaaggag gagaagtcct tccccacctc
     1681 ctgccagaag acgacgatct ccttctccag cccctcctcc ccctcctccc ccacctcctc
     1741 ggcggcgcag atctcccacc ccaccaccac gacgaaggac cccttctcct cccccacgcc
     1801 gccgctcacc gtctccaaga agatactctc ctcccatcca gaggagatac tctccttccc
     1861 cacctccaaa gaggagaact gcctcgcccc cacccccacc caagcgaagg gcatcgccat
     1921 ctcctccacc aaagcgccgg gtttcccact ctccacctcc taaacaaaga agccccccag
     1981 tcaccaagag acgctcaccc tccttatctt caaagcatag gaaagggtct tccccaggcc
     2041 gctccactcg ggaggcccgg tcaccacaac caaacaaaag gcactcgccc tcaccacgac
     2101 ctcgggcgcc tcagacctca agccctcccc ctgttcgaag aggagcttca gcgtctcccc
     2161 aaggaaggca gtccccgtct ccgagtacta ggcctattag gagagtctcc aggactccgg
     2221 aacccaaaaa gataaaaaag gctgcctcac caagccctca gtccgtaaga agggtttcat
     2281 cttcccgctc tgtctctgga tctcctgagc caacagctaa aaagcctcca gcacccccct
     2341 ctcctgtgca gtctcagtca ccctccacaa actggtcacc tgcagcacca gccaagaagg
     2401 ctaaaagccc aacaccaagc ccgtcccctg ccaggaattc tgatcaagaa ggaggtggaa
     2461 agaagaagaa gaagaagaag gacaagaaac ataagaagga taagaaacac aagaagcaca
     2521 aaaaacacaa gaaggagaag gctgtggccg tagccacccc agctcctgct gcccctgcag
     2581 ctgtctctgc tgccgccact ccatcagccc aggaagagcc tgcggcagca ccagagccca
     2641 ggaaggagac tgagagtgaa gctgaagatg acaaccttga tgacttagag aggcaccttc
     2701 gggagaaggc ccttcgatcc atgcggaagg cccaagtgtc cccacagtcc taggcggaca
     2761 tgtttgttac gttgtaaatt ttatttggtt tgtactcaat tcaatttcaa aattgctaaa
     2821 atgtgtttga gctttagact ataacatttg ttgtaataat tgctaggttg aagttcacca
     2881 tgttaaaaaa ggggggcatg gatttacatt acaaaggtgt ccacggtgta ttagtgacaa
     2941 ttcttccatt gacatttaga gtgaaatatt ttaagccaaa aaaaaatctc ttttttaaaa
     3001 aagggggttt gaatattgtt ggcatttttg tggttccttt aaatgccctc gcctctccca
     3061 aaaggttggg gtcttttctt tttctcccta ttctcttgaa tcttagcacc catgtaaatt
     3121 atgcttccaa ccttgtatag gtttgtaagc ttgcccagaa gtgagagcac tgttgaagta
     3181 ccacagaggt ttgggcgagt gagtgttgac tctgttgccc atggagtctg ctgtcctggc
     3241 agcatcccag ctctagagcg ccgcactcct gagctacagg gctgccccat ggaacagttc
     3301 ctaaactgac taggaactct gggttttctc cttccggttg tgttgttttg tttccttctc
     3361 cccttttctt cctcttttgt aaaggcgatt cactagaccc aggaaggacc cttcagttac
     3421 ataaatttgt tttatgaaac atggtggctc ccattcatgg tttcccttac tcttccaatt
     3481 ggtacacaca actgaggagc tcctgtattt ggccggctgg aagggcctgg acagtgtctt
     3541 gatttcactt gttttatttt attttatttt ttaactaaag ctatataaag cttgtggatt
     3601 aaacagaata aatttctaaa tttaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     3661 aaaaa
//
