LOCUS       NM_001305154            1116 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus SRR1 domain containing (Srrd), mRNA.
ACCESSION   NM_001305154 XM_001080556 XM_213799
VERSION     NM_001305154.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1116)
  AUTHORS   Adachi,Y., Umeda,M., Kawazoe,A., Sato,T., Ohkawa,Y., Kitajima,S.,
            Izawa,S., Sagami,I. and Taketani,S.
  TITLE     The novel heme-dependent inducible protein, SRRD regulates heme
            biosynthesis and circadian rhythms
  JOURNAL   Arch Biochem Biophys 631, 19-29 (2017)
   PUBMED   28802827
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000012.1.
            
            On or before Apr 1, 2015 this sequence version replaced
            XM_213799.8, XM_001080556.5.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: EV780743.1, CV104800.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on single protein-coding
                                                transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-200               JAXUCZ010000012.1  49955081-49955280
            201-241             JAXUCZ010000012.1  49957061-49957101
            242-465             JAXUCZ010000012.1  49958188-49958411
            466-564             JAXUCZ010000012.1  49958488-49958586
            565-719             JAXUCZ010000012.1  49959590-49959744
            720-765             JAXUCZ010000012.1  49960053-49960098
            766-1116            JAXUCZ010000012.1  49960343-49960693
FEATURES             Location/Qualifiers
     source          1..1116
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q16"
     gene            1..1116
                     /gene="Srrd"
                     /gene_synonym="RGD1562579"
                     /note="SRR1 domain containing"
                     /db_xref="GeneID:288717"
                     /db_xref="RGD:1562579"
     exon            1..200
                     /gene="Srrd"
                     /gene_synonym="RGD1562579"
                     /inference="alignment:Splign:2.1.0"
     CDS             49..969
                     /gene="Srrd"
                     /gene_synonym="RGD1562579"
                     /codon_start=1
                     /product="SRR1-like protein"
                     /protein_id="NP_001292083.1"
                     /db_xref="GeneID:288717"
                     /db_xref="RGD:1562579"
                     /translation="MAAVVAASERWSAVARRRKRAAGRRPRQGEEPQAEPEADSEAVL
                     RRLLEAEEDLRISDFCSSALETITECLRKQLEQLQSLTEALGRLHLGSSPGGSGEPLA
                     LSTSNVKCVCYGLGTFASCPAARIQLAFLLLFLEKCQIPRSHCWVYDPLFSQTEVSVL
                     TSLGVTVLSENEEGKHSVQSQPTVFYMPHCGTALYNNLLWSNWSADALSRVVIIGNSF
                     QGLEERLLARILQENYSYIAKILKGLEEFPLPQTPQYTDTFNDTSVHWFPLLKLEGLS
                     EDLWASREEPDYQNCEDLEIIRKPTATQLE"
     exon            201..241
                     /gene="Srrd"
                     /gene_synonym="RGD1562579"
                     /inference="alignment:Splign:2.1.0"
     exon            242..465
                     /gene="Srrd"
                     /gene_synonym="RGD1562579"
                     /inference="alignment:Splign:2.1.0"
     exon            466..564
                     /gene="Srrd"
                     /gene_synonym="RGD1562579"
                     /inference="alignment:Splign:2.1.0"
     exon            565..719
                     /gene="Srrd"
                     /gene_synonym="RGD1562579"
                     /inference="alignment:Splign:2.1.0"
     exon            720..765
                     /gene="Srrd"
                     /gene_synonym="RGD1562579"
                     /inference="alignment:Splign:2.1.0"
     exon            766..1116
                     /gene="Srrd"
                     /gene_synonym="RGD1562579"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgtcggcgg cttggcggcc gctctggcgc gctggtgacg tcagtgacat ggcggcggtc
       61 gtggcggctt ccgaacggtg gagtgcagtg gcccggcgga ggaagcgcgc ggcagggaga
      121 cggccgcggc agggcgagga gccccaggca gagccggagg cggacagcga ggcggtgctg
      181 cgccgcctgc tggaggccga ggaggacctg cggatctctg atttctgcag ttcagctctg
      241 gaaaccatca ccgagtgtct taggaagcag ctggagcaac tgcagtccct aacggaagct
      301 cttggaagac tgcaccttgg ctcatcacct ggtgggtccg gggagccctt ggccttaagc
      361 acctcgaatg tgaagtgtgt atgctatggt cttgggacct ttgcctcctg ccccgctgct
      421 cggatccagc ttgctttttt gcttctcttt ctggagaagt gccagatccc cagaagtcac
      481 tgctgggtct atgaccctct attcagtcag actgaggttt ccgttctcac ctccctgggt
      541 gtgacagtcc tcagtgagaa tgaggaaggc aagcacagtg tccagagcca gcccactgtc
      601 ttctacatgc cacactgtgg gacagctcta tacaacaacc tgctgtggag caactggtct
      661 gcagatgccc tgtccagggt ggtcatcatc gggaacagtt tccaaggcct cgaggaaagg
      721 ttgttggcga ggattcttca ggaaaattac tcatacattg caaagattct gaaaggcctg
      781 gaggagttcc cactgcctca aactccccag tacaccgaca ccttcaatga cacatctgtc
      841 cactggttcc ctcttctgaa gctggaaggc ttatctgagg acctgtgggc atcccgggaa
      901 gagcctgact accagaactg tgaggacctg gagatcatca ggaaacccac agccactcag
      961 ctggagtagc aggacaccat tctctccacc tgggccaggg gccacagtgc acaccacacc
     1021 agctctttgc taggccggga ctacagcccg actggggaca ctgagtcaca tcctgccctg
     1081 gtgccatggt ctcccaaata gagacgttat ttacca
//
