LOCUS       XM_039107228            3858 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SRSF protein kinase 2 (Srpk2),
            transcript variant X3, mRNA.
ACCESSION   XM_039107228
VERSION     XM_039107228.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039107228.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3858
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3858
                     /gene="Srpk2"
                     /note="SRSF protein kinase 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 44 ESTs, 6 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 82 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:296753"
                     /db_xref="RGD:1305107"
     CDS             259..2481
                     /gene="Srpk2"
                     /codon_start=1
                     /product="SRSF protein kinase 2 isoform X3"
                     /protein_id="XP_038963156.1"
                     /db_xref="GeneID:296753"
                     /db_xref="RGD:1305107"
                     /translation="MERRAARPAGCWPFRPESGGRKERNIRKKIKQKIELLMSVNSEK
                     SSSSERPEPQQKAPLVPPPPPPPPPPPLPDPVPPEPEEEILGSDDEEQEDPADYCKGG
                     YHPVKIGDLFNGRYHVIRKLGWGHFSTVWLCWDMQGKRFVAMKVVKSAQHYTETALDE
                     IKLLKCVRESDPSDPNKDMVVQLIDDFKISGMNGIHVCMVFEVLGHHLLKWIIKSNYQ
                     GLPVRCVKSIIRQVLQGLDYLHSKCKIIHTDIKPENILMCVDGAYVRRMAAEATEWQK
                     AVSTAPQQKPIGKISKNKKKKLKKKQKRQAELLEKRLQEIEELEREAERKILEENTTS
                     AEASSEQDGECQPEVKLKEAELEDTTEEETAKDNGEVEDQEEKEDTEKENTEKDEDDV
                     EQELENIDPTWMESPKANGHIENGLFLLEQQLEDEEDEEDDCANPEEYNLDEPNAESD
                     YTYSSSYEQFNGELPNGQPKSPEFPTPLFSGPLEPVASDSVLSEGSPLTEPEESSPSR
                     DRSRTVSASSTGDLPKTKTRAADLLVNPLDPQNADKIRVKIADLGNACWVHKHFTEDI
                     QTRQYRSIEVLIGAGYSTPADIWSTACMAFELATGDYLFEPHSGEDYSRDEDHIAHII
                     ELLGSIPRHFALSGKYSREFFNRRDHIALIIELLGKVPRKYAMLGKYSKEFFTRKGEL
                     RHITKLKPWSLFDVLVEKYGWPHEDAAQFTDFLIPMLEMVPEKRASAGECLRHPWLNS
                     "
ORIGIN      
        1 ctttcctttt cagctgtgtg catctttccc tcattaaact cgcgaagtag gcaaaggaga
       61 ggaaatcact tctccaaggt cacacagact caaggaccca ggctccccag ctcttggtct
      121 tgtgcccttt ccacgcctgc cggagaggag gaagcggcgc tcacagggat gcaaggatgt
      181 agaggcacaa agggatagaa gaggccgcgt tagagagctg gtgagagccc cgccaaggcg
      241 ctggccaagg aaggacccat ggagaggcgt gcagcacgac cagctgggtg ctggccattc
      301 aggcccgaaa gcggaggccg aaaagagaga aacatccgaa aaaaaatcaa gcagaagatt
      361 gagctgctga tgtcagttaa ctctgagaag tcgtcctctt cagaaaggcc ggagcctcaa
      421 cagaaagctc ctttagttcc tcctcctcca ccaccgccac cgccaccacc actgccagac
      481 cccgtgcctc cagagccaga ggaggagatt ctggggtcag atgatgagga gcaggaggac
      541 cccgcggatt actgcaaagg tggctatcat ccagtgaaaa tcggagacct cttcaatggt
      601 cgctatcatg tcattaggaa gctaggatgg gggcactttt ccaccgtctg gctatgctgg
      661 gatatgcaag ggaagaggtt tgtcgccatg aaagttgtaa aaagtgcaca gcattataca
      721 gagacagcct tggatgaaat taaattgctc aaatgtgttc gagaaagtga ccccagtgac
      781 ccaaacaaag acatggtagt ccagctaatc gatgacttca agatctcagg catgaatggg
      841 atacatgtct gcatggtctt cgaagtactt ggtcaccatc tcctcaaatg gatcatcaag
      901 tccaactatc aaggcctccc agtccgctgt gtgaagagta tcattcgaca ggtccttcag
      961 ggcttagact atctacacag caagtgcaag ataatccaca ctgatatcaa gccggagaac
     1021 atcctgatgt gtgtggacgg cgcgtacgtg cggagaatgg cggccgaggc tacggagtgg
     1081 cagaaagcag tgagtacggc tccacagcag aaacctatag gaaaaatatc taaaaacaaa
     1141 aagaaaaagc taaaaaagaa acagaagagg caggctgagt tgctggagaa gcgcctgcag
     1201 gagattgagg aattggagag agaagccgaa aggaaaatcc tagaagagaa caccacctct
     1261 gcagaagctt ccagtgagca agatggagaa tgccagcctg aggtgaaact gaaagaggcc
     1321 gagttagagg acacaactga ggaagagaca gcaaaggaca atggtgaagt tgaagaccag
     1381 gaagagaaag aagacacaga gaaggaaaac actgagaagg atgaagatga tgttgaacag
     1441 gaacttgaga acatagaccc tacgtggatg gagtccccta aggccaacgg ccatattgaa
     1501 aatggcctgt ttttactgga gcagcagctg gaggatgaag aggatgagga agatgactgt
     1561 gcaaaccccg aggagtataa cctggatgaa ccaaatgcgg agagtgatta tacgtatagc
     1621 agctcctatg aacaattcaa tggtgaattg ccaaacggac agcctaagag tccagagttt
     1681 cccacaccgc tgttttctgg gcccttagaa cctgtggcct ctgactctgt gctgtcagag
     1741 ggatcaccac tcaccgagcc agaggaaagc agtccatccc gtgacagaag caggacagtt
     1801 tcagcctcca gtactggaga cttgccaaaa acaaaaaccc gggcagctga cctgttggtg
     1861 aaccctctgg atccacagaa tgcagataaa attagagtaa aaattgctga cctgggaaat
     1921 gcttgttggg tgcataaaca tttcacagag gatatccaaa cacgtcagta taggtccata
     1981 gaggttttga taggagcagg ctacagtaca cctgcagaca tttggagtac agcatgcatg
     2041 gcatttgagc tggcaacagg agactatttg ttcgaaccgc attctgggga agactattcc
     2101 agagatgaag accacatagc ccacatcata gagctgctag gcagtatccc aaggcacttt
     2161 gctctgtctg gaaaatactc ccgggagttc ttcaaccgca gagatcacat agcattgatc
     2221 attgaactgc tggggaaagt ccctcgaaaa tacgctatgt tggggaaata ttccaaggag
     2281 tttttcacca gaaaaggaga actgcggcac atcaccaagc tgaagccctg gagcctcttt
     2341 gatgttcttg tggaaaagta tggctggccc catgaagatg ctgcacagtt tacagatttc
     2401 ctgatcccaa tgttagagat ggttccagaa aaacgagcct cagctggcga atgccttcgg
     2461 catccttggt tgaattctta gcagattcta caaatatagc attctgagct agcaaatttt
     2521 tcccagtaca ttggacctaa acagtggctc tcattcttta acaggattac aagtgagcgg
     2581 gctccaccca gacctttgtt ttgctttgag gtactgttgt ttgacacttc gcttcctgtg
     2641 caccacggtc ctggggaagg gtggtctttg tcttcagcta agtagtttac tcgccatttt
     2701 cttctggaaa caataacatg tctctaagca ttgtttcttg tgttgtgtga cattcaaatg
     2761 tcattttttt tttgaacgaa aaatactttc ccctttgtgt tttggcaggt tcgttaacta
     2821 tttatgaaga cacattttag ctgagtattc tataatttac actcttaaga aattatcagt
     2881 tggaaccaag aaagagcaag ggaatgtaca atgttctctt ctggcgaggg gaagtcagtc
     2941 cccctgtatt atatgtatgt aaccattcat ctgcacagat agggcgagga gtcccgcgcg
     3001 gaaagccgcc cgccctgagc ttcttagcct ccactgcatg tttcgggttt cccactgctt
     3061 caagaagttg cacaaacttt tcatcccgta gcagtccgag tggctctgga ttaggtgcca
     3121 tgccctctgt ggcccagcaa gagagaaaaa cattaaaatt gacactataa tctagcagtt
     3181 ccatttgtat tttgcatatt tttaaaacta tgtttaaaaa catgtgatgg cccagtacca
     3241 tctagtgttg cctcttccca gcactgtaag ttaaatgcgt tgtttaaatt ggacaagaga
     3301 aatatgttca gtgtgtggaa tgaaaaaaat aatatatttt cggaaaagca tgatcagtgt
     3361 ttgtttaaaa cacaaggtgt gtttctacag tttgcagcgc agtggacaga acacgcctca
     3421 cagcttacag gtagccgtga tcatgttcat tccaccggca gctttacttg ctactgcggc
     3481 tccccttgcc ttttcattac cgcccatgaa tgagaaggtc atttcccctt tgcagagcgc
     3541 atacagtttt agtttatgca tttccttaaa attaactgta gaatccagga cgcagacatt
     3601 agtaggcaat actattttag agtgtctcat aggaggtgta tttaacctct tttagaagtc
     3661 agtggattga atgtcttttt taaaaaattt ttattcatta aggtgcctcg ttttttcttg
     3721 actttgtcca ttaacattta tccatttgcc tttgcaataa ttagattgtg aaaagctaac
     3781 aagtgttgta acaataatcc tttgtttggg gtgcttgcac ttgtcttaaa aattaaagtg
     3841 ttttggggtg tttttcca
//
