LOCUS       NM_001371633            5060 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus sarcalumenin (Srl), transcript variant 1, mRNA.
ACCESSION   NM_001371633 XM_003750771
VERSION     NM_001371633.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5060)
  AUTHORS   Zhao,X., Yoshida,M., Brotto,L., Takeshima,H., Weisleder,N.,
            Hirata,Y., Nosek,T.M., Ma,J. and Brotto,M.
  TITLE     Enhanced resistance to fatigue and altered calcium handling
            properties of sarcalumenin knockout mice
  JOURNAL   Physiol Genomics 23 (1), 72-78 (2005)
   PUBMED   15998745
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1 and FQ224657.1.
            
            On Jul 19, 2019 this sequence version replaced XM_003750771.4.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643296.25364.1,
                                           SRR26643295.37071.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760386, SAMEA5760475
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-77                JAXUCZ010000010.1  11540443-11540519
            78-1370             JAXUCZ010000010.1  11566075-11567367
            1371-1472           JAXUCZ010000010.1  11570085-11570186
            1473-1568           JAXUCZ010000010.1  11572156-11572251
            1569-1685           JAXUCZ010000010.1  11576819-11576935
            1686-1919           JAXUCZ010000010.1  11578034-11578267
            1920-5041           JAXUCZ010000010.1  11581384-11584505
            5042-5060           FQ224657.1         3348-3366
FEATURES             Location/Qualifiers
     source          1..5060
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q12"
     gene            1..5060
                     /gene="Srl"
                     /note="sarcalumenin"
                     /db_xref="GeneID:302948"
                     /db_xref="RGD:1306564"
     exon            1..77
                     /gene="Srl"
                     /inference="alignment:Splign:2.1.0"
     CDS             17..2731
                     /gene="Srl"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 1"
                     /codon_start=1
                     /product="sarcalumenin isoform 1 precursor"
                     /protein_id="NP_001358562.1"
                     /db_xref="GeneID:302948"
                     /db_xref="RGD:1306564"
                     /translation="MKALLLLCCFLASLLLSGQAELQVSASGGTEDVGNLLENHFSAG
                     DASLEEKERALYADAAPGDKNLLLHYPDGREAESFEQPPAGAPSTANGQGSESEASLS
                     NSSAAESAPPGDVEGPGEEEEGPHAAGTLPPGGAEGPEERPEFSSGEEAGQEEAGVGL
                     PTEGAANMEAEAQEELQGRLGDGPMEEAAAGAAEPVAPQSTEGEEAEGEGSIGSDHQS
                     TELDGAQDAIPAGEDSDADVAAEAREEAEDQPEDHSLPSEDAAPPGPDHQPTDPHAVS
                     DMASSEVGAEEDAEDSKAEVDAETGEEAEDQGEPRPSLEAGSAREASEKSEDTQSSEV
                     RETEGQASGMSEEDLAEASSEEEGGEEDGRENGGLPSKEESGEDSGDGASSEEEGSTS
                     GEAAEPQKTPRATGHEEEGAQLDVEDLNTGSEGVKTQDTEAEASEERQQGRGNPVIAH
                     QEEAEDVSEEAPMRDRSHIEKTLMLNEDKPADDYSAVLQRLRKIYHTSIKPLEQSYKY
                     NELRQHEITDGEITSKPMVLFLGPWSVGKSTMINYLLGLEDTRYQLYTGAEPTTSEFT
                     VLMHGPKLKTIEGIVMAADSARSFSPLEKFGQNFLEKLIGIEVPHKLLERVTFVDTPG
                     IIENRKQQERGYPFNDVCQWFIDRADLIFVVFDPTKLDVGLELEMLFRQLKGRESQIR
                     IILNKADNLATQMLMRVYGALFWSLAPLINVTEPPRVYVSSFWPQDYKPDTHRDLFLK
                     EEISLLEDLNQVIENRLENKIAFIRQHAIRVRIHALLVDRYLQTYKDKMTFFSDGELV
                     FKDIVEDPDKFYIFKTILAKTNVSKFDLPNREAYKDFFGINPISNFKLLSQQCSYMGG
                     CFLEKIERAITQELPSLLGSIGLGKNPGAPNCDKTGCGETPKNRYKKH"
     exon            78..1370
                     /gene="Srl"
                     /inference="alignment:Splign:2.1.0"
     exon            1371..1472
                     /gene="Srl"
                     /inference="alignment:Splign:2.1.0"
     exon            1473..1568
                     /gene="Srl"
                     /inference="alignment:Splign:2.1.0"
     exon            1569..1685
                     /gene="Srl"
                     /inference="alignment:Splign:2.1.0"
     exon            1686..1919
                     /gene="Srl"
                     /inference="alignment:Splign:2.1.0"
     exon            1920..5042
                     /gene="Srl"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tctcttggca gtcaccatga aggcgctgct cctgctctgc tgcttcctgg cctcgctgct
       61 gctttcagga caagcagaac tgcaagtctc tgcttcgggt ggcacggaag atgttggcaa
      121 tttgttggag aatcatttct ctgctggaga cgcaagtcta gaggagaaag aaagggcgct
      181 ttatgcagat gcggcccctg gagacaagaa cctactcctt cactacccag acggcaggga
      241 ggctgagagc ttcgagcagc ctcctgcagg ggccccttcc actgccaacg gccagggctc
      301 cgaatccgaa gctagcctgt ccaattcctc agctgcagag tcagctccac ccggggatgt
      361 cgaagggccc ggggaggaag aggagggccc acatgcagca ggcacccttc ctccgggagg
      421 ggctgagggg ccagaagaga ggccagagtt cagttctgga gaggaagcag gacaggagga
      481 ggctggggtg gggctcccca cagagggggc tgcgaatatg gaggcagaag cacaagagga
      541 attgcagggg cgcttaggag atgggcctat ggaagaagca gcagccgggg cagcagagcc
      601 tgtagctccc cagtccacag agggtgaaga ggcagaaggt gagggcagca taggctctga
      661 tcaccaatcc acagagctag atggagccca ggatgccata cccgctggag aggactcaga
      721 cgctgacgtg gctgccgaag ccagggagga ggcagaggac cagcccgagg accactccct
      781 gccgtcagag gatgccgcac ccccagggcc tgatcaccag cccacagacc cacacgcagt
      841 ctctgacatg gcatcttccg aagtaggggc agaggaagac gctgaagact caaaggctga
      901 ggtggatgca gaaactgggg aggaggctga ggaccagggg gagcctagac ctagcctgga
      961 ggctggctca gctagagagg ccagtgaaaa gtccgaggac acccagagtt ccgaggtgag
     1021 ggagacagag ggccaggcat cagggatgtc ggaggaggac ctggctgagg cctcctctga
     1081 agaagagggc ggtgaagaag atggaaggga gaatggagga cttccatcta aagaagagtc
     1141 tggagaagac agtggtgacg gagctagctc agaagaagag gggagcacct ccggggaggc
     1201 tgcagagccc cagaaaacac caagagccac aggacatgag gaggaagggg cccagcttga
     1261 tgtggaagat ttgaacacag ggtccgaggg cgtcaagacc caggacacag aagcagaggc
     1321 atctgaagag agacaacagg ggagagggaa tcctgtaatt gctcatcagg aagaggcgga
     1381 ggatgtgagc gaagaggctc ccatgaggga tcgctcccac atcgagaaaa ccctgatgct
     1441 gaatgaggac aagccagcgg acgattactc agcggtgctg cagcggcttc ggaagatcta
     1501 ccacacatcc atcaagcccc tggagcagtc ttacaagtac aatgaacttc gacagcatga
     1561 gatcacagac ggggagatta cttccaagcc aatggtgctg ttcctgggac cgtggagcgt
     1621 tggcaaatcc accatgataa actacctcct tggattagaa gatactcgat accagcttta
     1681 tacaggtgct gaacctacca cctctgagtt cactgtcctc atgcatgggc ccaagctgaa
     1741 aaccattgag ggcatcgtca tggctgctga cagtgcccgg tccttctcac cactggaaaa
     1801 gtttggccag aattttctgg agaagctgat tggcattgag gttccccaca agcttctaga
     1861 acgagtcact ttcgtggata ctccgggcat cattgagaac cgcaagcaac aagaaagagg
     1921 ttaccccttc aacgatgtgt gtcagtggtt catcgacaga gccgacctca tcttcgttgt
     1981 ctttgatccc accaagctgg acgtgggcct ggagctggag atgctcttcc gacaactaaa
     2041 aggacgcgag tcccagataa ggatcatttt gaacaaggct gacaacctgg ccacacaaat
     2101 gctcatgcgg gtgtatgggg ctctcttctg gagcttggcc cctctcatca atgtcacgga
     2161 gcctccccgg gtttacgtca gctccttctg gccacaggac tataagcccg atacccaccg
     2221 ggatctgttc ctcaaagaag agatctctct cctggaagac ctgaaccagg tgatagagaa
     2281 caggctcgag aacaagattg cttttattcg ccagcacgcc atcagggtcc gaatccacgc
     2341 ccttttagtt gaccgctatc tgcagactta caaggacaaa atgaccttct tcagtgacgg
     2401 ggaactggtc tttaaggaca ttgtggaaga tcctgataaa ttctacatct tcaagaccat
     2461 cctggcaaag accaatgtca gcaagtttga ccttcccaac cgtgaggctt ataaggactt
     2521 ctttggcatc aaccccattt ccaatttcaa actcctctct cagcagtgct cctacatggg
     2581 gggctgcttc ctggagaaga ttgaacgagc catcacccag gagctcccca gccttctggg
     2641 tagcattggg cttgggaaga atccaggtgc tcctaactgt gacaaaacag gctgtggaga
     2701 gaccccaaag aatcgctaca agaagcacta gtttctgcgt agctatcctc gggtccccgt
     2761 tggtgaataa gcttgcgtcc taactgtctg agaagtcctg gtttgttaac cctttgagcc
     2821 atactggcga caaccagtct gcattggaga tttggaagtt cactgaggcc ggtgaatcag
     2881 ggaaggcaca gggttctagg gaggagagcg gtaactgtga atcatagtgt gcttgtccta
     2941 ctgcttcagt tagaaggcct gacacaggcc aagtcagtct acaaagcttc ccttgttttt
     3001 tctgggtcct gtcttggaag ggcagagagc agctaaatcc taatgaatac taagatagtg
     3061 aggttctaat aagctaaact catggaaatt tcctgagtaa cagaggcttc tcaggtctgt
     3121 gtcaactcct ttcacacacg tcttctgttt gatccctgtc cctccttggc tccctcctaa
     3181 gcttgggttg attttcagaa gtggacagtc tcttgagttt gatcttcatg aattttgagc
     3241 ctaaccttgg aatcctctcc cagttttctc aaggggcggg gcatccataa acctaaaaca
     3301 agagttttta aattagggtg ttgatctgcc gccactggtg tcccaattgg ggatctcaga
     3361 cagttgtccc taaaaggagg gtgagtgggt gatgtactca agtaccttcc cctccttaca
     3421 cggaggtatg aagggctccg ggggttaatt ggtttgcagt gtgtctttgt ctgttgcatg
     3481 tcttggaaag ctcagatcac agaggtgttg ggtttcagag tggacaatgg agaccttgct
     3541 cctagtcctt agagggttct ctggacagac attctcccaa gttttggtgg aagctgtttc
     3601 tacagcttct ttgtgggagc acttgacaga ggacttgcct cctctggttc ccagaaccat
     3661 ggtttctctt ttcctttctt ctccattccc tgatgcatca atacttccaa ctgagaaaaa
     3721 gtccctcgga tcagaaccag taccagcccc ttgacattgg cattggtgcc agataaggcc
     3781 tgaggttaga ttcaaactga attcctgcag atacccaccg agtgcagtca ggactgtcaa
     3841 ggccttcaaa caccagtgaa tgtgcactta gtgtgtccac tgtacaagag acagcccgga
     3901 ggatgacaga tttgagggca cagagagagg actcctggga gtcgtgcaag gcacacatac
     3961 actgccacct tgaagtgcag gagagcaaga cgctctggaa gggtgaagag ctttttgatg
     4021 gagcaggcaa ggtgaagttc agcctgcctt gagggcttcc tctgggcaca gccagctgct
     4081 ttcgttttgg agcaacctct cctggaggcc ttgattgtga ggcatgggtt gggatccagc
     4141 agcagcaggg tgtcatctgg agcagaaggg aagtgggagg gaaggctgag ccaacgttat
     4201 tctttctgag gatcaaatat gcagcgtaag catattggta accgaggagg ctacacagag
     4261 aacatcaact gaggggtttg tgtttctccg aattctttga agtctggtgc cttctaagga
     4321 aggctgctgt tttggctcct cgtagggccc aggacctgct gccgtaagtc aaaagctcca
     4381 gaactgccag gacagtgtct ccaaggaatg agttcctccc ataagggtca ttcatggagc
     4441 ttggtggcta gggtagatga gctgcaatct gtcttgggtt tttcttccca aactcctccc
     4501 ctcttctctc catcatgcgc tctctggaga gactgtccct cccacccttc tccttcctgc
     4561 ccctcatgcc tgtgagtttt gtgtggcaaa tctgtttttc tctcaatgca gaaacggggg
     4621 aaaaagctga actgtatgga gcctgtccta gctgtcagtg cctgcatgct tcgggggaag
     4681 caggtgaaat gaggccaatg aattcttaca gcatttgcgt ttggggggag gcacctgact
     4741 agtggtacct tccttccttt tggatttctc tccatccatt tcttctctgc ctccattctg
     4801 tctctctccc actcacaggc cgctgacagt cccacagctt tcagcactca atctttgcct
     4861 ggccgtgcag agctgggttt tgagcaggat tctgactagg aggagggaaa aacgtgggat
     4921 gcagagattt cctgagggga acatctgtgt ctgtgcctga agagtggctg acctttccag
     4981 tgtcctttct attctgattt catcagggag aacgtctcaa taaagttcca atctctcttc
     5041 aaaaaaaaaa aaaaaaaaaa
//
