LOCUS       NM_001399769            3511 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus S1 RNA binding domain 1 (Srbd1), mRNA.
ACCESSION   NM_001399769 XM_237474
VERSION     NM_001399769.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3511)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Jan 14, 2022 this sequence version replaced XM_237474.9.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643295.24259.1,
                                           SRR26643289.17366.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-37                JAXUCZ010000006.1  14228433-14228469
            38-117              JAXUCZ010000006.1  14232127-14232206
            118-298             JAXUCZ010000006.1  14235363-14235543
            299-664             JAXUCZ010000006.1  14237989-14238354
            665-831             JAXUCZ010000006.1  14243342-14243508
            832-949             JAXUCZ010000006.1  14246228-14246345
            950-1088            JAXUCZ010000006.1  14247862-14248000
            1089-1185           JAXUCZ010000006.1  14252675-14252771
            1186-1321           JAXUCZ010000006.1  14253633-14253768
            1322-1425           JAXUCZ010000006.1  14257971-14258074
            1426-1533           JAXUCZ010000006.1  14262260-14262367
            1534-1691           JAXUCZ010000006.1  14265565-14265722
            1692-1782           JAXUCZ010000006.1  14276355-14276445
            1783-1890           JAXUCZ010000006.1  14277046-14277153
            1891-1982           JAXUCZ010000006.1  14321761-14321852
            1983-2065           JAXUCZ010000006.1  14329341-14329423
            2066-2172           JAXUCZ010000006.1  14383184-14383290
            2173-2349           JAXUCZ010000006.1  14385327-14385503
            2350-2505           JAXUCZ010000006.1  14389381-14389536
            2506-2690           JAXUCZ010000006.1  14413250-14413434
            2691-3511           JAXUCZ010000006.1  14416674-14417494
FEATURES             Location/Qualifiers
     source          1..3511
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q12"
     gene            1..3511
                     /gene="Srbd1"
                     /gene_synonym="RGD1562788"
                     /note="S1 RNA binding domain 1"
                     /db_xref="GeneID:301665"
                     /db_xref="RGD:1562788"
     exon            1..37
                     /gene="Srbd1"
                     /gene_synonym="RGD1562788"
                     /inference="alignment:Splign:2.1.0"
     CDS             38..2980
                     /gene="Srbd1"
                     /gene_synonym="RGD1562788"
                     /codon_start=1
                     /product="S1 RNA-binding domain-containing protein 1"
                     /protein_id="NP_001386698.1"
                     /db_xref="GeneID:301665"
                     /db_xref="RGD:1562788"
                     /translation="MPSLRKRTKIQTENAEPRDECSSFSELSSGSEEDNKEDSIWEPQ
                     KKVLRNRRRPASKGSKRKQGPRVKKSAQQVHDISKDVAVKEELNSPVAIVNANLEEEN
                     QKLHTTNTLKTAAKKQKNAGHGAKKRLKVDEETNQASPFEGGESNVEAPSTSEDRDMC
                     KKESEDSFTFEQSPLKRIKTESCPQGRPARVPGASDIKEEVEMNWDIVQVLSERTNIE
                     PWICANIIRLFNDDNTIPFIVRYRKELINNLDADFLREVRQTLDELRDVAKKVHSRIQ
                     KIKKEGKMSECLLQALLNCKTFEELEHVSAPYKMGSKGTKAQRAKQLGLEGAAWTLLE
                     NPGQLNLPSYIRPDVKGLSELKDIETGVQHILADMIAKDKDTLDFIRDLCKHRYICIQ
                     SSLAKVSSKKVNEKEVDKFQLYQNFSCNIRNIHHHQILAINRGENLKILTVKVNISDG
                     VKNEFCRWCIQNRWRPRGFARPELMKILHNSLDDSFKRLIVPLLCRELRAKLTSDAEK
                     QSVMMFGQNLRQLLLTSPVPGRTLMGVDPGYKHGCKLAIISPTSQILHTDVVYLHCGQ
                     GFREAEKIKRLLLNFNCNTVVIGNGTACRETEAYFADLIMKNYFAPLDVVYCIVSEAG
                     ASIYSVSPEANKEMPGLDPNLRSAVSIARRVQDPLAELVKFDPKHIGVGMYQHDVSQT
                     LLKATLDSVVEECVSFVGVDINICSEVLLRHIAGLNANRAKNIIEWREKNGPFINREQ
                     LKKVKGLGPKSFQQCAGFVRVNQDYIRTFCSGQHTDSSGQSQEAAMVTKEKPGKKKNK
                     ADVALTPNPLDETCIHPESYDIAVRFLSFIGGTLYEIGKPEMQQKINSSLGKEGIEKT
                     AERLQTTAHTLQVIIDGLSQPKTFDIRTDFDKPDFKRSIVCLADLQVGTILTGKVENA
                     TLFGVFVDIGVGKAGLIPIRFITEAKLSKTKKRRSLGLGPGEKVEVKVLSVDIPRSRI
                     SLDLLRVL"
     exon            38..117
                     /gene="Srbd1"
                     /gene_synonym="RGD1562788"
                     /inference="alignment:Splign:2.1.0"
     exon            118..298
                     /gene="Srbd1"
                     /gene_synonym="RGD1562788"
                     /inference="alignment:Splign:2.1.0"
     exon            299..664
                     /gene="Srbd1"
                     /gene_synonym="RGD1562788"
                     /inference="alignment:Splign:2.1.0"
     exon            665..831
                     /gene="Srbd1"
                     /gene_synonym="RGD1562788"
                     /inference="alignment:Splign:2.1.0"
     exon            832..949
                     /gene="Srbd1"
                     /gene_synonym="RGD1562788"
                     /inference="alignment:Splign:2.1.0"
     exon            950..1088
                     /gene="Srbd1"
                     /gene_synonym="RGD1562788"
                     /inference="alignment:Splign:2.1.0"
     exon            1089..1185
                     /gene="Srbd1"
                     /gene_synonym="RGD1562788"
                     /inference="alignment:Splign:2.1.0"
     exon            1186..1321
                     /gene="Srbd1"
                     /gene_synonym="RGD1562788"
                     /inference="alignment:Splign:2.1.0"
     exon            1322..1425
                     /gene="Srbd1"
                     /gene_synonym="RGD1562788"
                     /inference="alignment:Splign:2.1.0"
     exon            1426..1533
                     /gene="Srbd1"
                     /gene_synonym="RGD1562788"
                     /inference="alignment:Splign:2.1.0"
     exon            1534..1691
                     /gene="Srbd1"
                     /gene_synonym="RGD1562788"
                     /inference="alignment:Splign:2.1.0"
     exon            1692..1782
                     /gene="Srbd1"
                     /gene_synonym="RGD1562788"
                     /inference="alignment:Splign:2.1.0"
     exon            1783..1890
                     /gene="Srbd1"
                     /gene_synonym="RGD1562788"
                     /inference="alignment:Splign:2.1.0"
     exon            1891..1982
                     /gene="Srbd1"
                     /gene_synonym="RGD1562788"
                     /inference="alignment:Splign:2.1.0"
     exon            1983..2065
                     /gene="Srbd1"
                     /gene_synonym="RGD1562788"
                     /inference="alignment:Splign:2.1.0"
     exon            2066..2172
                     /gene="Srbd1"
                     /gene_synonym="RGD1562788"
                     /inference="alignment:Splign:2.1.0"
     exon            2173..2349
                     /gene="Srbd1"
                     /gene_synonym="RGD1562788"
                     /inference="alignment:Splign:2.1.0"
     exon            2350..2505
                     /gene="Srbd1"
                     /gene_synonym="RGD1562788"
                     /inference="alignment:Splign:2.1.0"
     exon            2506..2690
                     /gene="Srbd1"
                     /gene_synonym="RGD1562788"
                     /inference="alignment:Splign:2.1.0"
     exon            2691..3511
                     /gene="Srbd1"
                     /gene_synonym="RGD1562788"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atcagaactc cagtctatag attcgccaac ccggaagatg ccatcattgc gcaaaagaac
       61 aaaaatacag acggagaatg cagagcccag agacgagtgt tcatcctttt ctgagttgtc
      121 atctggctct gaagaagaca acaaggaaga cagcatttgg gaacctcaga agaaagtcct
      181 cagaaatcgt agacgacctg cttccaaggg atccaaacgg aagcaggggc ctagggtgaa
      241 gaagagcgcc caacaggtgc atgacatctc aaaagatgtg gctgtcaagg aggagttgaa
      301 cagcccagtg gctattgtta atgccaattt ggaagaggaa aatcagaagt tgcatacgac
      361 aaacactctg aaaactgcag caaaaaagca aaaaaacgca ggtcacgggg ccaaaaaaag
      421 gttgaaagtt gatgaggaaa ccaaccaagc cagccccttc gagggtggag agagcaatgt
      481 ggaggccccc tcaacaagcg aggacagaga catgtgcaag aaggagagtg aggacagctt
      541 cacctttgag cagtccccat taaagaggat caagactgag tcatgtcctc aggggaggcc
      601 tgccagggtg cccggggcca gcgacattaa ggaggaggtg gaaatgaact gggacatagt
      661 gcaggtttta tctgagagaa ctaacattga accttggatt tgtgccaaca tcatacgcct
      721 ctttaatgat gacaatacaa ttcccttcat tgtacgctat cgaaaagagc ttattaataa
      781 ccttgatgct gatttcttaa gagaagttcg tcaaacccta gatgagctac gggatgttgc
      841 aaagaaggtt catagtagaa tccagaaaat taagaaggag gggaagatgt ctgagtgctt
      901 gctacaagcc ttgttgaact gtaaaacatt tgaagaacta gagcatgtgt ctgctccata
      961 taaaatgggg agcaagggca ccaaagccca gagagcaaaa cagttgggat tagaaggagc
     1021 agcatggaca ctgctggaga acccagggca actcaacctc ccgtcttaca tcaggcctga
     1081 tgttaaaggc ctttctgagc tcaaggatat cgaaacagga gtacagcata ttttagcaga
     1141 catgattgca aaagacaaag acacacttga cttcattcgg gacttgtgta aacatagata
     1201 catttgtatc cagtcatctc ttgcaaaagt atcctcaaaa aaagtaaatg agaaagaagt
     1261 tgataagttt cagctttacc agaatttttc ctgcaacata agaaacatcc accatcacca
     1321 gattctggcc attaaccgag gagagaatct gaagatactg acagtcaagg tcaacatttc
     1381 tgatggagtg aagaatgaat tctgtcggtg gtgtatacaa aacaggtgga ggccacgtgg
     1441 ctttgcacgg ccagagttaa tgaagatttt acataattca ctagatgact cctttaaacg
     1501 tctcattgtt cctctcctct gtagagagct cagagccaaa ctgacctcgg atgcagagaa
     1561 gcaatcagtc atgatgtttg gacagaatct ccgccagctc cttttaacca gtcctgttcc
     1621 aggccgcacc ctgatgggag tggatcctgg ctacaaacac ggatgcaaac tagccatcat
     1681 ttctcctact agtcagatac ttcatactga tgtggtttat ttgcactgtg gacaaggttt
     1741 ccgagaggca gagaagatca agaggctttt gctgaatttc aactgcaaca cagtggtgat
     1801 cggaaacgga actgcctgcc gggaaactga agcttacttt gctgacctga taatgaaaaa
     1861 ttactttgca ccgctggatg ttgtttactg catcgtgagt gaagcagggg cctctatcta
     1921 cagtgtcagc cctgaagcta acaaggagat gccggggctg gaccctaact tgagaagtgc
     1981 agtttccata gcaaggcgtg ttcaagatcc attagctgag ctagtgaaat ttgacccgaa
     2041 gcacattgga gttggaatgt atcagcatga tgtatcccag acattactca aggccacact
     2101 ggacagtgtt gtagaagaat gtgtcagctt tgtgggagtg gatattaaca tctgttctga
     2161 ggttttatta aggcatattg caggactcaa tgccaataga gccaaaaata ttattgagtg
     2221 gcgagagaaa aatgggcctt tcatcaaccg agaacagttg aagaaggtaa aagggcttgg
     2281 tccaaaatcc ttccagcagt gtgctggctt tgtcagagtc aaccaggatt acatccggac
     2341 attctgcagt ggtcagcaca ctgattcttc aggccagagc caggaagctg ccatggtcac
     2401 aaaagagaag cccggcaaga agaagaacaa agcagatgtc gccctcacac caaacccact
     2461 ggacgagact tgcatccacc cggagtccta tgacatagca gtcaggtttt tgtcgttcat
     2521 tggggggaca ctgtatgaga ttggaaagcc tgaaatgcaa cagaaaataa attcgtctct
     2581 cggaaaagaa ggcatagaga aaactgccga aaggttgcag acgactgcac acaccctaca
     2641 ggtcatcata gatggtctga gccagcccaa gacctttgac atccgaacag attttgataa
     2701 gcctgacttc aagagaagca tagtgtgtct ggcagatctg caggtcggga caattcttac
     2761 aggcaaagtg gagaatgcca ctctgtttgg ggtttttgta gatataggtg tggggaaggc
     2821 ggggctgatc cccatccgat tcataacaga agcaaagcta tccaagacaa agaagagaag
     2881 gagcctgggc ctgggccctg gagaaaaagt ggaggtgaaa gtcctcagtg ttgacattcc
     2941 ccgatccagg atttcacttg acctcctccg ggtgttgtga gtgccccaat gaacgccaaa
     3001 caccaatgtc ttccctcatt tctacagcct gacaaggaca agccagagct catgaaacct
     3061 agagaataga tggaagggac tcctgggtag aagtgtttat cacactatcc tgacttccca
     3121 cgaaaagagc catggacgtc ctcacgtgac gccctacagc agcagtttct gtctttgtaa
     3181 tttctcgttg accacactct aagcgggtga ctgcacatcc tcctgctgcc gtctgctgcc
     3241 gcagacctgg taggttgtct tttatttgaa gtgtgtggtg ttgattgaca tattaagact
     3301 agtactcttt aatcctgcca ttttgttgag gtattattag cccttttact cacaattcat
     3361 aattttgtaa taatctttat tttcccttag caaaccaagt aaaaatatac tagtaaaaga
     3421 ttatcatgtg tttatgacca tcaattgaat catttcgatg tgttcctcag aacatatgta
     3481 tcaacctgta caataaatga ctggctggtg a
//
