LOCUS       NM_001401713            5204 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus SPT2 chromatin protein domain containing 1
            (Spty2d1), mRNA.
ACCESSION   NM_001401713 XM_039100977
VERSION     NM_001401713.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5204)
  AUTHORS   Chen,S., Rufiange,A., Huang,H., Rajashankar,K.R., Nourani,A. and
            Patel,D.J.
  TITLE     Structure-function studies of histone H3/H4 tetramer maintenance
            during transcription by chaperone Spt2
  JOURNAL   Genes Dev 29 (12), 1326-1340 (2015)
   PUBMED   26109053
REFERENCE   2  (bases 1 to 5204)
  AUTHORS   Osakabe,A., Tachiwana,H., Takaku,M., Hori,T., Obuse,C., Kimura,H.,
            Fukagawa,T. and Kurumizaka,H.
  TITLE     Vertebrate Spt2 is a novel nucleolar histone chaperone that assists
            in ribosomal DNA transcription
  JOURNAL   J Cell Sci 126 (Pt 6), 1323-1332 (2013)
   PUBMED   23378026
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Feb 22, 2022 this sequence version replaced XM_039100977.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643288.2579.1,
                                           SRR26643290.2113.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-321               JAXUCZ010000001.1  106685551-106685871 c
            322-436             JAXUCZ010000001.1  106677105-106677219 c
            437-1969            JAXUCZ010000001.1  106674868-106676400 c
            1970-2135           JAXUCZ010000001.1  106673466-106673631 c
            2136-2213           JAXUCZ010000001.1  106672076-106672153 c
            2214-5204           JAXUCZ010000001.1  106667750-106670740 c
FEATURES             Location/Qualifiers
     source          1..5204
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q22"
     gene            1..5204
                     /gene="Spty2d1"
                     /note="SPT2 chromatin protein domain containing 1"
                     /db_xref="GeneID:100365259"
                     /db_xref="RGD:2319415"
     exon            1..321
                     /gene="Spty2d1"
                     /inference="alignment:Splign:2.1.0"
     CDS             262..2307
                     /gene="Spty2d1"
                     /note="SPT2, Suppressor of Ty, domain containing 1; SPT2,
                     Suppressor of Ty, domain containing 1-like"
                     /codon_start=1
                     /product="protein SPT2 homolog"
                     /protein_id="NP_001388642.1"
                     /db_xref="GeneID:100365259"
                     /db_xref="RGD:2319415"
                     /translation="MDFREILLIASKGQGVNHVPKRYSLAVGPPKKDPKVKGVQSAAV
                     QAFLRRKEEELRRKALEEKKRKEELVKKRIELKHDKKARAMAKRTKDNFHGYDGTPIE
                     EKTKKRQVVESPLNQGTDQEYDMEEEDFIEYNQADLDQDYEEEQEPPKVESKPKAPLK
                     SAPSPMNFTDLLRLAEKKQFEPVEIKVVKKAEDRPLTAEELREREFLERKHRKKKPEP
                     DAKLPPAMSKRAPSHKDIRGTQPSKGAGDRQPPSKGLPPPHAEKKFRPSTANEKQVAL
                     PSSKSLPGERTKVGSGSSSQPSLREGHSRPVFNGAGKSHPSTCAPSVPKTAASGTQKS
                     ASEHKAKKSLSSHPSHSKPGPTVLSHNKAKSPGVRQPGSNSGSAPGQPGPGTARPALS
                     SGPVPRRQNGSSSSGPEQSVSGIRKPASNSHPSGRTLNGTSGPGRPASSSNGPGRPIS
                     GSAGSGRPVGSSGGPGQPINSPHDLRRPMNNLGLPGRSVSGPGRPISGSIPAGRTASS
                     GPGRPVSSLGPGRTVSNSGVPTKPKCTVVSETISSKNIISRSSNGQMNGMKPLPSGYR
                     SAQGPQRLPFPTGYKRPREYDDDDDEYDSEMDDFIEDEGEPQEEISKHIREIFGYDRK
                     KYKDESDYALRYMESSWKEQQKEEAKSLRLGMQEDLEEMRREEEEMKRRKAKKLKRH"
     exon            322..436
                     /gene="Spty2d1"
                     /inference="alignment:Splign:2.1.0"
     exon            437..1969
                     /gene="Spty2d1"
                     /inference="alignment:Splign:2.1.0"
     exon            1970..2135
                     /gene="Spty2d1"
                     /inference="alignment:Splign:2.1.0"
     exon            2136..2213
                     /gene="Spty2d1"
                     /inference="alignment:Splign:2.1.0"
     exon            2214..5204
                     /gene="Spty2d1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gttgcgcaaa tactcgcgag cgctgcggag tcgctgagtt ttgtgtgtgt gtacacacac
       61 atacacatat attgtattcg gctgcagcgc gggggcggta cacggcatta gaaggcgccg
      121 gaagtgtcgg tgttgagggg cggcgggaga agggccacca aggcaagcca gtcagtagag
      181 cttaggctca gcgagcaaca agactcgcgt ccgccgcttc ccgagtcccc ggctcagccg
      241 ggctgttctc ttcagccaga catggacttc agggaaatcc tcctgatcgc ttccaaagga
      301 caaggtgtca accatgtacc gaaaaggtac agtttggcgg tgggacctcc gaagaaagac
      361 ccaaaagtga aaggtgtcca gtcagcagcc gtgcaagctt tccttaggag gaaagaagag
      421 gagcttagac ggaaagcctt ggaagagaaa aaaaggaaag aggaactagt gaaaaagcga
      481 attgagctca aacatgacaa aaaagcaaga gctatggcca agaggacaaa ggacaatttt
      541 catggttacg atgggactcc tatcgaggaa aagacaaaga agagacaggt ggtggaaagt
      601 cccctgaacc agggaactga tcaggagtat gatatggagg aggaagactt catagaatac
      661 aatcaggccg atttggacca ggactatgag gaggagcaag agcctcccaa ggttgaaagc
      721 aaaccaaagg ccccccttaa aagtgcccca tcacccatga acttcactga cttactgagg
      781 ctagctgaga agaagcagtt tgaaccagtg gagatcaagg tagtgaaaaa agcagaagat
      841 cggcccctga ccgcagagga actgagggag cgagagtttc ttgaacggaa gcataggaaa
      901 aagaaacctg aacccgacgc caaactacct ccagccatgt ccaaaagggc gccctctcat
      961 aaagacatca ggggcacaca gcccagcaaa ggtgccgggg acaggcagcc tccttccaaa
     1021 ggattgcccc ctcctcacgc tgagaagaaa ttcagaccca gcacagccaa tgagaaacaa
     1081 gtagctttgc cttcatccaa atccctgcca ggagagagga ccaaggtagg atctggcagt
     1141 agctcccagc cctcacttcg agagggtcac agcaggcctg tcttcaatgg ggcgggaaag
     1201 tcccacccca gcacctgtgc accaagtgtc ccaaagactg ctgctagcgg gactcagaaa
     1261 tctgcttctg agcacaaagc caaaaaatct ctttcttctc atccgagcca ttccaagccg
     1321 gggcccacag ttctctcaca caacaaagct aagagtccag gtgtcagaca accgggcagc
     1381 aactctggct ctgctccggg gcaacctggc ccgggtacag ctcggcctgc acttagttct
     1441 ggccctgtgc ccaggcgcca gaacggcagc tccagctcag ggcctgagca gtcagtcagt
     1501 ggaatcagaa agccggccag caattcacat ccctctggac gaacactcaa tggtacaagt
     1561 ggccctgggc gacctgcaag cagctctaat ggccccgggc gtcccatcag tggatctgct
     1621 ggttctggaa gacctgtggg cagttctgga ggccctgggc agcctataaa cagtccacat
     1681 gaccttcgac gaccaatgaa caatctaggc cttcctgggc ggtcagtcag tggccctggg
     1741 agacccataa gtggttccat tccagctgga cgaactgcca gttcaggccc tggaagacca
     1801 gtgagcagct taggacctgg acgaacagtt agtaactctg gtgtccccac aaagcccaaa
     1861 tgcactgttg tctcagagac aatttcttcg aagaatatta ttagtcggtc aagcaatgga
     1921 cagatgaatg gaatgaagcc tctcccctct ggctacagat ctgcccaagg tcctcagagg
     1981 ctacccttcc ccactggcta caaaaggcct cgagagtatg atgatgatga tgatgaatat
     2041 gactcggaaa tggatgattt catcgaagat gaaggagaac ctcaggaaga aatatccaag
     2101 cacattcgag agatctttgg ctatgaccga aagaaataca aagacgaaag tgactatgcc
     2161 ttacgttata tggagagcag ttggaaggag cagcagaagg aggaagccaa gagtttaaga
     2221 ctaggtatgc aagaggactt ggaggaaatg aggcgtgaag aggaggaaat gaaacgtcga
     2281 aaggccaaga agctgaagcg acactagctg ctgctgctgt gaattctggg agggacactg
     2341 ctgcaaggat ttcctgcctt cagactgagc aagcctctta gcggcttaga ttcacccatg
     2401 ggcacgcaag aggaaggaat acatgctttc gtttgcaggc tatcgtttga gtgtgcagtg
     2461 ttttcagata gtccagggtg ggacctgtaa tgctggctgt gtgctctgct gaagtcagcc
     2521 attcccgggg tcggcgtgat cctgatgagc tatgcatgct actgtgggac cgctccccag
     2581 tcagctgatc gctgttcctt tgctacttca caaggagact gacatgtgag tagggtacca
     2641 cccagatcgc agtctcactt gtccttagga agggcctggc ccttctgtga atgctgccag
     2701 caataaagtg acctgtccta gtctatgttt gaattgaaaa cccaggaaag agtaggcttt
     2761 atagatatta cgtgactttg acacacaaaa tagaatgaat tatattgtat ttagcttatt
     2821 tgtgaattgg atgctaagca ttcttaattg atattaggta ataaaaattt cttaagttaa
     2881 aataccagtt ttgccggaac aagaatgttc ttttccagtt ctcctttcaa gctttctgtt
     2941 atgttgattt tgcctgaagt agatgagggc ccttactatt atggtgatta gttttttgtt
     3001 tgtttaattc ctttttatat taaagaaaga tggttattca gatattagat ttgaaaggtt
     3061 agtagtttaa aaattagcaa gcaacatgta ttttggcccc ttctgcttta ttctcccaat
     3121 taaaatgctg tttgggaccc taaggtgacc ctgtacccct tgatgttaat aacattgcat
     3181 ttgtagctta aattccttag aaaatgttaa tgaccaaaaa gccaaatatt tagtgtatca
     3241 ggaataccac ctctctttgt ccgtattgca cttttatttc taactatgca ctgtgaagag
     3301 ataattttcc ctgttgttgg tgttttactg agctgtgtga aaccttaagt tctatcctgc
     3361 ttaaagccag acctacagac ttgatgtcac ttcagcctag agtccatcca ggctgatcta
     3421 tggtctggct ggaaggaagc catgtctcga ggacagtcag caacagaaaa tgaaatacca
     3481 cgctagagac tggagtgtgg agggttggga gtagccagaa tttggattgt gggacaattc
     3541 cacatgactc tggctgtctt aaactgttaa gccatgatgg gtgggaagct ggagaggctg
     3601 tcctacaaag tactcttttc aacaggtcca gactttatgc attttgtcca tgatgtcttc
     3661 attctttaag cttgagtatt atgggtaatc atgtttcgcc ttcctttgtg ggaccatttg
     3721 acccagtcct taaaacaaac tcattttgaa ttgagtttca gactttgaga aagtgcaagg
     3781 atttaatttt agagggtata gaacactatg agtctccatg taggtcttta tacactggga
     3841 acagagtcta ttaacttccc tttccctagc ccaccgctaa tacaaaggga gtaagattcc
     3901 acttgataag taggtttgag cattgtgtca ttgctgtcac ttgtatgttt cccctcctct
     3961 gattttccct gaataacctt ttttcatatc catactctgg actctgtcat tgcagtcaaa
     4021 gttactggcg gctgaaagtt tactgtactc aatgtcaggg tgcagctgtt tgcacagaaa
     4081 ggagccgttg tgctagatta aagtttcaga gctcagtaga ttgagattgt aatgtctgtc
     4141 atgtatgcat gcatttctgt aacagacatg catcaacttt tacataagta cgcttgtgtg
     4201 actcgttgag aaaacacagg aaagaaagat tgtaagtcca aatcatgtct tccactttgc
     4261 tcttctatat ttcttgacca cttagaaaaa aagctcacaa gcctttgaag aaacagcagc
     4321 aggctgttat ttttttcaag gtttacaaat taagtgcttg atttttaatg tattctcgct
     4381 actgttttga ttttcagatc ttgattcaat atttgaagat gtgcctttta ttgggtaatg
     4441 ttaattctcg aatgtagtaa tgttgtacca caattgtaat gttacatgat catgggtgtg
     4501 gcattctctg acaaattatg tgacaagaaa gtcattttca gagaactcat ggctccgatt
     4561 gcacagtccc cttgctaaag caaagggcac tctcttaagg ctacttcaga actggtcttt
     4621 gtattttctc taagtgatgg atgcgtcgtg tccatttaga ggcagggtac cacgtgtccc
     4681 aggcagccct agatatgtgc catgagaaag ttcaaagact aacaaagtct acaggaactc
     4741 aaaatttcat ttttgtaatg gtaacccccc aagattttct ccaagaaata aattattttg
     4801 tactttataa cttaaaagca gctagtagta catttctgag atatagcagg agaccaaaac
     4861 atttttggaa aaagaataaa tatataaaga gagactggtt gttttatttt cagtgtgctg
     4921 attagactat ttattgtgtg agtggatgag atgaaataca tattcaggtg ttcagtgtgt
     4981 gattaagagt ggaatataga tttctttggc attattaaat ccatgatatc ttctacataa
     5041 tggacacatc aaatatgaaa gaaaaacaaa cactttggca tagcttagct tgttttctgg
     5101 tgctgttgac ctgcagaaga gtatactttt gcatatacag gtgaatgtct tgcaatttat
     5161 gtatacaaga aattgtaggc attaaaatat tttgttgata tttt
//
