LOCUS       NM_001191790            2414 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus SPRY domain containing 3 (Spryd3), mRNA.
ACCESSION   NM_001191790 XM_235711
VERSION     NM_001191790.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2414)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2414)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Jul 17, 2010 this sequence version replaced XM_235711.5.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643286.24595.1,
                                           SRR26643289.22087.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760400,
                                           SAMEA5760434 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-23                JAXUCZ010000007.1  135143753-135143775 c
            24-170              JAXUCZ010000007.1  135141573-135141719 c
            171-246             JAXUCZ010000007.1  135139985-135140060 c
            247-371             JAXUCZ010000007.1  135138643-135138767 c
            372-507             JAXUCZ010000007.1  135138253-135138388 c
            508-693             JAXUCZ010000007.1  135136655-135136840 c
            694-843             JAXUCZ010000007.1  135129429-135129578 c
            844-901             JAXUCZ010000007.1  135129054-135129111 c
            902-1021            JAXUCZ010000007.1  135128480-135128599 c
            1022-1194           JAXUCZ010000007.1  135128229-135128401 c
            1195-2414           JAXUCZ010000007.1  135126598-135127817 c
FEATURES             Location/Qualifiers
     source          1..2414
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q36"
     gene            1..2414
                     /gene="Spryd3"
                     /gene_synonym="RGD1561500"
                     /note="SPRY domain containing 3"
                     /db_xref="GeneID:315327"
                     /db_xref="RGD:1561500"
     CDS             1..1329
                     /gene="Spryd3"
                     /gene_synonym="RGD1561500"
                     /EC_number="2.7.1.112"
                     /codon_start=1
                     /product="SPRY domain-containing protein 3"
                     /protein_id="NP_001178719.1"
                     /db_xref="GeneID:315327"
                     /db_xref="RGD:1561500"
                     /translation="MRRTRRPRFVLMNKMDDLNLHYRFLNWRRRIREIREVRAFRYQE
                     RFKHILVDGDTLSYHGNSGEVGCYVASRPLTKDSNYFEVSIVDSGVRGTIAVGLVPQY
                     YSLDHQPGWLPDSVAYHADDGKLYNGRAKGRQFGSKCNSGDRIGCGIEPVSFDVQTAQ
                     IFFTKNGKRVGSTIMPMSPDGLFPAVGMHSLGEEVRLHLNAELGREDDSVMMVDSYED
                     EWGRLHDVRVCGTLLEYLGKGKSIVDVGLAQARHPLSTRSHYFEVEIVDPGEKCYIAL
                     GLARKDYPKNRHPGWSRGSVAYHADDGKIFHGSGVGDPFGPRCYKGDIMGCGIMFPRD
                     YILDSEGDSDDSCDTVILSPTARAVRNVRNVMYLHQEGEEEEEEEEEEEDGEEIEQEH
                     EGKKVVVFFTRNGKIIGKKDAVVPSGGFFPTIGMLSCGEKVKVDLHPLSG"
     exon            1..23
                     /gene="Spryd3"
                     /gene_synonym="RGD1561500"
                     /inference="alignment:Splign:2.1.0"
     exon            24..170
                     /gene="Spryd3"
                     /gene_synonym="RGD1561500"
                     /inference="alignment:Splign:2.1.0"
     exon            171..246
                     /gene="Spryd3"
                     /gene_synonym="RGD1561500"
                     /inference="alignment:Splign:2.1.0"
     exon            247..371
                     /gene="Spryd3"
                     /gene_synonym="RGD1561500"
                     /inference="alignment:Splign:2.1.0"
     exon            372..507
                     /gene="Spryd3"
                     /gene_synonym="RGD1561500"
                     /inference="alignment:Splign:2.1.0"
     exon            508..693
                     /gene="Spryd3"
                     /gene_synonym="RGD1561500"
                     /inference="alignment:Splign:2.1.0"
     exon            694..843
                     /gene="Spryd3"
                     /gene_synonym="RGD1561500"
                     /inference="alignment:Splign:2.1.0"
     exon            844..901
                     /gene="Spryd3"
                     /gene_synonym="RGD1561500"
                     /inference="alignment:Splign:2.1.0"
     exon            902..1021
                     /gene="Spryd3"
                     /gene_synonym="RGD1561500"
                     /inference="alignment:Splign:2.1.0"
     exon            1022..1194
                     /gene="Spryd3"
                     /gene_synonym="RGD1561500"
                     /inference="alignment:Splign:2.1.0"
     exon            1195..2414
                     /gene="Spryd3"
                     /gene_synonym="RGD1561500"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgaggagga cgcggcggcc ccggtttgtt ctcatgaaca agatggatga cctcaacttg
       61 cactaccggt ttctgaactg gcgaaggagg attcgggaga tccgagaggt ccgggctttc
      121 cgatatcagg agaggttcaa gcatatcctt gtagatggtg acactttgag ttaccatgga
      181 aattctggtg aagttggctg ctatgtggct tctcgacccc tgaccaagga cagcaattat
      241 tttgaggtat ctattgtgga cagcggcgtc cggggcacca ttgctgtggg actggtccct
      301 cagtactaca gcttggatca ccagcctggc tggttgcctg actctgtagc ctaccatgct
      361 gatgatggca agctatacaa tggccgcgcc aagggacgtc agtttgggtc aaagtgcaac
      421 tctggggacc ggattggctg tggcattgag cctgtgtcct tcgatgtgca gactgcccag
      481 atcttcttca ccaaaaacgg gaagcgggtg ggctccacca tcatgcccat gtccccagat
      541 gggctcttcc cagcagttgg tatgcattcc ctgggtgagg aggtgaggct gcacctcaat
      601 gccgagctgg gccgtgagga tgacagcgtc atgatggtgg acagttatga agatgaatgg
      661 ggccggctgc atgatgtcag agtctgtggg acgctgctgg agtatttggg gaagggcaag
      721 agcatcgtgg acgtgggact ggctcaggct cggcacccac tcagcacccg cagccattac
      781 tttgaggtgg agattgtgga ccccggagaa aagtgctata tcgccttggg gctggcccgg
      841 aaggattacc ccaagaacag acaccctggc tggagtaggg ggtctgtggc ctaccatgca
      901 gatgatggga agatattcca tggcagtggt gtgggggacc cctttgggcc acgctgctac
      961 aaaggggaca ttatgggctg tggaatcatg ttcccccggg actacattct ggacagtgag
     1021 ggggatagtg atgacagttg tgacacagtg atcttgtctc caactgcccg ggctgtccgg
     1081 aacgtccgaa acgtcatgta cctgcaccag gaaggggaag aggaagagga ggaagaggag
     1141 gaggaggaag atggggaaga gatagagcag gagcatgagg gcaagaaggt ggtggtcttc
     1201 ttcacccgga atggcaagat cattgggaag aaggatgctg ttgtaccgtc tggaggcttc
     1261 tttcctacca ttggcatgct cagttgtggg gagaaagtga aagtagacct gcaccccttg
     1321 agtggctagc agggctccct gtacatctgc tctctccgtc tgcatcttcc ctccaggcct
     1381 cccccaggat ttgttcacag caggccctgg gagggcatcc ccctgtttct gtcagctcag
     1441 gctacacctc tttgtccctg ggcctgagag cagtggtagg aatgggccca aaggacagtg
     1501 ttgacatgca tgggagggtc cccgtgactg ggttagtggg cacctggatc tcctttacct
     1561 cgctgggccc tgagccagtt ggaagggata agcccacctg cttacatggt gggcatggtg
     1621 ctctgccgag ggtagagtag aggcagtctg tccctactta ccacatagtt cccctgaatt
     1681 ctcttcattc cttctcctcg tgtgaaccag ttgctgctgt ctccccctgg ctgggctagg
     1741 gggcctatct tggccatttc tcctttcact ggctgctgtc ctaaaacaca tctagggtct
     1801 ccgttgtttc ctgagagatg gtcccaccca caacccacca cagaaagcct gagcctggct
     1861 tactgcctct cacatgcaga ttgctgagtc tgtgtgagtg agaggctgtg tggcagtatg
     1921 ggactgcagc cttggctgcc atctccttgt ctgcactctt cttcaaggca cctctagccc
     1981 tggctcgaga tggagccaag gcactaacta gggcatgtgt tgtattgtgc tgtttgccca
     2041 gagcagcagc tcagcccctt gtttctcctc acctgcccac ccccaccctg tgccccagct
     2101 tgctgcctgt gccagttgac tgtttttgct tcagtgtttg attctagtgt ctctatagac
     2161 ccccccccca accagtcctc ctcttcccgt ttcctgagct cctccacccc atgaacgggg
     2221 gacgaagaag ccggagctct tggtctcagt ttgcacagtg gtgggactgg ggagggattc
     2281 gttgtcatgc tgctggggct ccccttgccc ctcctttcgg gccctgcact atgatatatg
     2341 aaatgtatgt acagacagag atgtttatac aaccaataaa gacggagttt ccgtatttat
     2401 caggacacac agaa
//
