LOCUS       NM_001109066            5037 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus SREBF pathway regulator in golgi 1 (Spring1),
            mRNA.
ACCESSION   NM_001109066 XM_001080049 XM_573404
VERSION     NM_001109066.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000012.1.
            
            On Feb 1, 2022 this sequence version replaced NM_001109066.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643290.41504.1,
                                           SRR26643297.40297.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN12840107,
                                           SAMN12840111 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-196               JAXUCZ010000012.1  43989849-43990044   c
            197-353             JAXUCZ010000012.1  43978274-43978430   c
            354-505             JAXUCZ010000012.1  43973518-43973669   c
            506-619             JAXUCZ010000012.1  43973108-43973221   c
            620-5037            JAXUCZ010000012.1  43967146-43971563   c
FEATURES             Location/Qualifiers
     source          1..5037
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q16"
     gene            1..5037
                     /gene="Spring1"
                     /gene_synonym="RGD1562310"
                     /note="SREBF pathway regulator in golgi 1"
                     /db_xref="GeneID:498188"
                     /db_xref="RGD:1562310"
     exon            1..196
                     /gene="Spring1"
                     /gene_synonym="RGD1562310"
                     /inference="alignment:Splign:2.1.0"
     CDS             86..703
                     /gene="Spring1"
                     /gene_synonym="RGD1562310"
                     /note="UPF0454 protein C12orf49 homolog"
                     /codon_start=1
                     /product="SREBP regulating gene protein"
                     /protein_id="NP_001102536.1"
                     /db_xref="GeneID:498188"
                     /db_xref="RGD:1562310"
                     /translation="MLNLAALLWRRLLRKRWVLALVFGLSLVYFLSSTFKQEERAIRD
                     RNLLQVQDREQPIPWKVQFNLGNSSRPSNQCRNSVQGKHLITDELGYVCERKDLLANG
                     CCDVSVPSTKQYCCNGCLANGCCEAYEYCVSCCLQPSKQLLLERFLNRAAVAFQNLFM
                     AVEDHFELCLAKCRTSSQSVQHENTYRDPIAKYCYGESPPELFPA"
     exon            197..353
                     /gene="Spring1"
                     /gene_synonym="RGD1562310"
                     /inference="alignment:Splign:2.1.0"
     exon            354..505
                     /gene="Spring1"
                     /gene_synonym="RGD1562310"
                     /inference="alignment:Splign:2.1.0"
     exon            506..619
                     /gene="Spring1"
                     /gene_synonym="RGD1562310"
                     /inference="alignment:Splign:2.1.0"
     exon            620..5037
                     /gene="Spring1"
                     /gene_synonym="RGD1562310"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcttgctgcg ggaaggtaaa agcagtgctg ggagcgtact aggggtcatg ccgcggggtc
       61 gtctctgcgc ctgcgccctg ccgggatgct gaaccttgcg gcgctgctgt ggcgccggct
      121 cctgcgcaag cgctgggtgc tcgccctggt tttcgggctc tcgctggttt acttccttag
      181 cagtaccttc aagcaggaag agagggccat aagagaccgg aacctcctcc aggttcaaga
      241 ccgggaacag cccatccctt ggaaggtgca gtttaaccta ggcaacagca gccgacctag
      301 taaccagtgc cggaactccg ttcaagggaa acacctcatc accgacgagc tgggctatgt
      361 ctgcgagagg aaggacctgc tggcgaatgg ctgttgcgac gtcagtgtcc ccagcacgaa
      421 gcagtactgc tgtaatgggt gcctggccaa tggctgctgt gaagcctacg agtactgtgt
      481 ctcctgctgt ctgcagccca gcaagcaact tctcctggag cgcttcctca accgggcagc
      541 cgtggccttc cagaacctct tcatggcagt tgaggaccac ttcgagctct gcttggccaa
      601 atgcaggacc tcatcccaga gtgtgcagca tgagaacacg taccgtgacc ccatagccaa
      661 gtactgctac ggagagagcc cgcctgaact cttccctgcg tgaggcctga cggagagaca
      721 cacccagaac cagtccggtc cactgggtaa tgaaggagaa aaccacacaa ggatccttgg
      781 ccttgaccat gtctgtggct ttgagtgtct ccgaccgctg gagcagatgg acagagccat
      841 tctgcagagc atgctggacc aggtcctggc acctcgcagg gccctgggac tgctagtcag
      901 aggccggtgc tcgcctctgt ttggtcctga cttcagagtg gaggaaggcg ctgtgttttg
      961 tgcaggacac ctttgccttt ccagaggagt acagtggagg aggtgactgt tgccctcact
     1021 tcctgagtgt catcccaagt gcatgtgtgc tccggcagtg tgggtgtgca cgctcagttc
     1081 tggttctgtt ttaacgtctg accagcaagc cttgtatcca cattcccaac cttcaagggt
     1141 gcctaaagcc tgggaggttc cgggccccgc tgagcctgtg tagagctgcc ttggtgggct
     1201 cacagactga aatggtagat gaatccctgg ctgactctcc cagtggagtt ggccgtcact
     1261 gtttctcctc agcctcgggg ccggggagcc tttcccttgt ctgtcacaga agccagtggg
     1321 gactggcgag tgtctgcgtg aatgagtaca gcagccgctc actcttggct gctctctgcc
     1381 ccccccaccc ccccaccccc gatggtgttt ataaggaaaa gcctcaggtc ttactccagc
     1441 caaggccagc ttcacatccc ctatcagcgg gagaatgtgc gagccgcagt cgagagagct
     1501 tcccaaggca ggtctgtgtc catagtaact gaaaggaggt tttaagccta aggtcaagac
     1561 accgcctcct gtactctccc catcctgttt tctcccatta gcacacattt cctccccaga
     1621 ccttttgccg acccttacga tgggccatgg tgttgtgtgg ttttggttca ggttgacctg
     1681 ggatctactg tgagtctcaa gatttcctgt ccgtggcttc ggggaacctt gtctcactac
     1741 tgtgtttacc tccaggatgg aatttccccc agctccctcc tgcttcctct tgctgttcgc
     1801 gtcggaattg tattctctca gctctacgga aggacagact gacgggcggt tgctctcttg
     1861 ttttgtcttg ccatgccggg ctcgagccca ggactttgtg tacgattggc aaactcactg
     1921 ttacggagcc acggccctgg ccagggaatc gatgtctagt gttagatccc agtagttctt
     1981 ttctgtttgc cctggacttc tcggtgtgtt gactcaaact tcacaaaaga actgggtgat
     2041 cctgcacgtt ctggtacata ctggaatgtt ctggcatgtt ccgacgtgtg gtatgtgttt
     2101 gacaccagcc ttgaactcct gactctcctc ccctgggaag agtccaccct tggtcagctg
     2161 tggcgttggt tggcctctcc cttgagttca ttttcagagt gttgacacag gtttagtatg
     2221 aacagacatg cccggttgcc agctctccct gaccgggcac cagaaagaca cgttgtgtct
     2281 gtgggtgagt tcacagtctg cattgttgtg gtcaagaatc tggtctgctt gtgtttcact
     2341 ctgtgggtta gaagatgggt ggcagccaag acacaatgat caaacccaca caggaactca
     2401 tcctgaatcc accccatgtc ctctagtgca gaatcacctc cacaccgttt ctccgaagaa
     2461 cagatagtcc cagacaggag agggcagagt tgtcatgtac atccacaaga agtcagcaac
     2521 acaaatgtca ctttcaaatt tgctgcggct gtggaatgtg gttttgtgct ttaatcaagt
     2581 aggggtgtgt gcgcctgcac agaggtgcct atcttcagaa attctcagca tctcagacaa
     2641 acgtggcact ggccagggaa gggcccccca ctcacctccc ttgaagggtt gttcttgagc
     2701 tcccttgatg gggttcctag aatcagaggc tgtggtttcg tgtacaagac aaaagtgaat
     2761 cacacgatgt ctaggggggc tctggggaag agcaggggcg agaacatcct cagcctagaa
     2821 aggacggtta ctgttattaa gtgtgagggg ctgcgggtct gaagcccttc tctcctgtct
     2881 gaatgcgcat tcattgggct tcttgctggg ataccacagt tggaaccttg gagagaagaa
     2941 acataatagc aagagggtct tgaaactgtt acaggagaag aatgtagctc cccaaccctg
     3001 cctgaccaca gaagggtaag ctcccgtgtt cttgtgaagt agaggaggtc ctttatggca
     3061 gtgatggacc cggaaggctg accgagagcc tttgcaggaa gtggtgtggg gagcagtggt
     3121 gcactgggat tctgggtctg gttcttcccg gctttgggct ttgcaggtaa atcatgagct
     3181 ggccgcttct cacagccagg actggagtgt ggctggagcc tggaaccact gcttctcaac
     3241 agtgtgacct ttgagtcgtg ggcttttcat ttagaacatg gagtcacgtg tttacctgtg
     3301 aacgtgccct gaggtgtccc gagtgagact ctacctcccg aggggccagt gtgggcagcc
     3361 ccgggaagct actaggcaag ggtgtgtggt cgagggctag cggggtggaa gagcactagg
     3421 ccatgagcgc ttcaagatac ggttgagaga aggtattgta gatatgaagg gggcacctgt
     3481 aagagcccag aggacaggga gagagcagtg ggcaagcatg actgagagag agaaagagac
     3541 agacagacag acaaaacagt tgggcgtggg gggtggggtg tcaagagctc atggccaaaa
     3601 tggcagagtt ctaaagagac aggaagctgg gggaagggaa tctggagacc agggcagggc
     3661 tgggtgagag gagccgtagg tagtagtgac tggggaatcc tggaggccag tgtgtacatt
     3721 agcaggctaa caagcatcat agctagccac ttgtcctgag gtaggcttgc ttgttttgtt
     3781 tttgggacct ggcacgatgg gtaaaataat cacctaaaac taaaaaaaaa atcacagagc
     3841 ctagagctaa ggaccagcta cttccttctt cctctgacct gccttgttat ctgcaggccc
     3901 atgtgacatc cacacagggc aggacaaaca cgcgtgtgag gtgtttgtgt attcaggcac
     3961 acacacacac acgcattcct acctccttaa gtatggcggt ggtctagtac cgggctgtcc
     4021 atgacaccaa gccaccgata ggttgcaaac ttctagctca ttctgcagac aggtttcggc
     4081 tgggtggatg gtgagctcac caagcacgcg tcgcacaggg ccttgaggca ggaacgtgct
     4141 gttatgcgag cgtgtcctgt ggggatcacc gcataattta atcagcactt tagcatggta
     4201 tttctccagg gtggggaagt aatgaagtca gcactcagtg ctgggagttc tcggttcagc
     4261 cttgggcaca gtggtgacct agacttgggc tcagttaaac tcagcactgc cagcatccgt
     4321 ggtgtgacta tagtagccac tgtgggccag ggaaaggagt atcgtggcct cccaacccat
     4381 cagagacaag tggcatcttc ccaattccag ctgggaagat agtatttcag gacactgcca
     4441 aacggctcct gagggtcagg gagagattac ccccgagtta caaaacactg ccctaactta
     4501 attagaaaga caggtttggg gatgtgaacc aagtgctgtg agtggttgca ggagggaaag
     4561 ttaatcgaga agaggctggg ccgaggttga aattccagga ggccgagggt gtaagataga
     4621 gaatttgagc tagcctggga tacagagaca cacccccctc caacccaaaa gcaaaagaaa
     4681 ggggtgggga gaaagggcag caagaaagaa aaattctttc aggcttcatt tcaaaacgtt
     4741 ctgtagtaag caataggaag aaagaggcta aaataagtgg tcagtcaaaa cgcagcgggg
     4801 ctcactgtga gttaatccac acaaaccaat agccgtctca gtaggtttca gaatagacgt
     4861 aagaccgggc atggtggcac gtggttcaat ttctggcact cggaaggctg ggcaggtgag
     4921 tccaagtcca aggacagctt ggattccgtg cagagtcctg cctgaaacac aaaatttttt
     4981 ttaaagatta ataaaatatt ttcttaatta atggtggtga ttctgacgac aacaaca
//
