LOCUS       NM_001100996            1941 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus speckle-type BTB/POZ protein family member 2 like
            1 (Spopfm2l1), mRNA.
ACCESSION   NM_001100996 XM_578055
VERSION     NM_001100996.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1941)
  AUTHORS   Huang,C.J., Lin,W.Y., Chang,C.M. and Choo,K.B.
  TITLE     Transcription of the rat testis-specific Rtdpoz-T1 and -T2
            retrogenes during embryo development: co-transcription and frequent
            exonisation of transposable element sequences
  JOURNAL   BMC Mol Biol 10, 74 (2009)
   PUBMED   19630990
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1941)
  AUTHORS   Choo,K.B., Hsu,M.C., Chong,K.Y. and Huang,C.J.
  TITLE     Testis-specific expression and genomic multiplicity of the rat
            Rtdpoz genes that encode bipartite TRAF- and POZ/BTB-domain
            proteins
  JOURNAL   Gene 387 (1-2), 141-149 (2007)
   PUBMED   17071022
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Feb 15, 2023 this sequence version replaced NM_001100996.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY902366.1, SRR26643293.13138.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-42                JAXUCZ010000002.1  184540548-184540589 c
            43-116              JAXUCZ010000002.1  184533457-184533530 c
            117-410             JAXUCZ010000002.1  184532630-184532923 c
            411-1941            JAXUCZ010000002.1  184526166-184527696 c
FEATURES             Location/Qualifiers
     source          1..1941
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..1941
                     /gene="Spopfm2l1"
                     /gene_synonym="RGD1559714; RTDPOZ-T1; Tdpoz; Tdpoz-T1"
                     /note="speckle-type BTB/POZ protein family member 2 like
                     1"
                     /db_xref="GeneID:502570"
                     /db_xref="RGD:1559714"
     exon            1..42
                     /gene="Spopfm2l1"
                     /gene_synonym="RGD1559714; RTDPOZ-T1; Tdpoz; Tdpoz-T1"
                     /inference="alignment:Splign:2.1.0"
     exon            43..116
                     /gene="Spopfm2l1"
                     /gene_synonym="RGD1559714; RTDPOZ-T1; Tdpoz; Tdpoz-T1"
                     /inference="alignment:Splign:2.1.0"
     exon            117..410
                     /gene="Spopfm2l1"
                     /gene_synonym="RGD1559714; RTDPOZ-T1; Tdpoz; Tdpoz-T1"
                     /inference="alignment:Splign:2.1.0"
     exon            411..1941
                     /gene="Spopfm2l1"
                     /gene_synonym="RGD1559714; RTDPOZ-T1; Tdpoz; Tdpoz-T1"
                     /inference="alignment:Splign:2.1.0"
     CDS             445..1251
                     /gene="Spopfm2l1"
                     /gene_synonym="RGD1559714; RTDPOZ-T1; Tdpoz; Tdpoz-T1"
                     /note="TDPOZ-T2-like; TD and POZ domain-containing protein
                     5-like"
                     /codon_start=1
                     /product="speckle-type BTB/POZ protein family member 2
                     like 1"
                     /protein_id="NP_001094466.2"
                     /db_xref="GeneID:502570"
                     /db_xref="RGD:1559714"
                     /translation="MSRDLEVKSCGYIHISVQNFCYEWAIRNFSFCMDGIRENITSPG
                     FSLEASEEVQWCLTIYPNGVDEESTDYLSVYLGLLSCPKSPVWAKVQFWIINAQGEKY
                     VITKISDVLRFLPNRYWGCKNFILRDFLLYHSHWLLPEDKLTLCCKVSIIGPYFSRPG
                     QNMPPAIRDPMQILAEDLGELWENSLFTDCSLVVAGQEIRSHKAILAARSPVFRAMFE
                     HEMLDSLRNRIEIHDIHLQVFKEMMHFIYTGTVPHLHNHSMATGLLAAAD"
ORIGIN      
        1 caccccaaga aaaagaaaaa ggaacagcat agaagctgag aggaccaaca gagcaagcac
       61 tgcagttcca agtctgaaga ggtcagaact cacctgaaga gtatgcagac tatgagaaca
      121 tagagccagt tcacttagag actctggata gaaaaaaaca cacctttaat ctgattcctg
      181 tgtcaggaaa ttacacacct ttaatcccga ttttgagacc agaagactgg gccacacctt
      241 ctgctggagg tctatataag ctcatggaag aaggaagctt tgtatctttg cctgcttgct
      301 ttcatcttac tagcaagccc atttttcata ggcgttagag cccacttctt cagaattcca
      361 gcatatactg aagaacgtga acaccacaga cttcaaacct tgtggactaa atcaacttta
      421 acctccaaac tacctccaga agacatgtca agggacctgg aagtcaagag ctgtggctac
      481 atacacatca gtgttcagaa tttctgctat gagtgggcca ttagaaactt ttcattttgc
      541 atggatggaa ttcgggaaaa tattacaagc ccagggttct cattagaggc cagtgaagaa
      601 gtacaatggt gtttgacaat atacccaaat ggtgttgatg aagaaagcac agattacctg
      661 tctgtttacc tgggtttgct cagttgtcca aagagcccag tttgggcaaa ggtacagttc
      721 tggatcataa atgcccaagg agagaaatat gttattacaa agatctcaga tgttttaagg
      781 tttctgccaa atcgatactg gggatgcaaa aatttcatcc ttcgagattt cctcctttac
      841 catagtcatt ggcttctccc tgaagacaag cttaccctgt gttgcaaggt gagcataata
      901 ggaccctact ttagcaggcc tggacagaac atgccacctg caatcaggga tccaatgcaa
      961 atattggcag aagacctagg agagctgtgg gaaaattccc tcttcacaga ctgcagcctg
     1021 gtggtagctg gccaggaaat cagatctcac aaggccattc tagcagctcg ctctccagtt
     1081 ttcagagcca tgtttgaaca tgaaatgcta gatagcttaa gaaaccgcat tgagatccat
     1141 gacattcatc tgcaagtctt taaggaaatg atgcatttca tttacacagg gacggtacca
     1201 cacctccaca accactcaat ggccactggt ttgttggcag ctgctgatta gtatgccctg
     1261 cagggcttga agttcatgtg tgaggatgcc ctgttcagca acatctctgt gaaaaatgct
     1321 gtacccactc tcatcctggc tgacctccac agagcagaga acctgaagac taaagctatg
     1381 gatttcatta tacttcatgt ttctgaagtc tctgataccg tggggtggaa gtcaatggtg
     1441 gagtcacatc cctacttggt ggaggaaaca tttcactccc tggcttctat acattgtcct
     1501 tgcttggagc cctcactcaa atgctgaaag atattttagg agcttgacag ctatgaccta
     1561 cacctgtctt ccaacagcaa caaccactca ttttaccaat gacttctgtt tagactacag
     1621 tattgctgga gcatttacag tgaatctggg caaaggcagc ctggatttac aagagctgta
     1681 atatgtcaaa atggtgtgtg gggaaagggc agcactaggg tcttggacac tctacgggat
     1741 atctaccctg ctgatgtttt attcttgtct gatgtcttga acctgggatt caactggcct
     1801 gaaacacagc tcaactgact ctttggaaaa acctgtctgc attatactga gcagaacaga
     1861 tgacctaact taactggcat gtaaaaattt tcacctaatt tatgtgtatt atatatctgc
     1921 aaataaaaat ctttcaacct t
//
