LOCUS       XM_039085599            2739 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus speckle type BTB/POZ protein (Spop),
            transcript variant X7, mRNA.
ACCESSION   XM_039085599
VERSION     XM_039085599.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2739
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2739
                     /gene="Spop"
                     /note="speckle type BTB/POZ protein; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 73 ESTs, 3 long SRA reads, 23 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 24 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:287643"
                     /db_xref="RGD:1311613"
     CDS             92..1216
                     /gene="Spop"
                     /codon_start=1
                     /product="speckle-type POZ protein isoform X1"
                     /protein_id="XP_038941527.1"
                     /db_xref="GeneID:287643"
                     /db_xref="RGD:1311613"
                     /translation="MSRVPSPPPPAEMSSGPVAESWCYTQIKVVKFSYMWTINNFSFC
                     REEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKF
                     KFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCE
                     VSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAIL
                     AARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAA
                     ADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVLE
                     TSGWKSMVVSHPHLVAEAYRSLASAQCPFLGPPRKRLKQS"
ORIGIN      
        1 ttcaaacata cagaaaagta gagagggtga agaaagacca gaaatctttg ccccctgact
       61 ttggagaccc agtttaacct tcaaactggc gatgtcaagg gttccaagtc ctccacctcc
      121 ggcagaaatg tcgagtggtc ctgttgctga gagctggtgc tatacacaga tcaaggtagt
      181 gaagttctcc tacatgtgga ccatcaataa ctttagtttt tgccgggagg aaatgggtga
      241 agtcataaaa agttcaactt tttcatcagg agccaatgat aagctgaaat ggtgtttgcg
      301 agtaaacccg aaggggctgg atgaggaaag caaagattac ctgtcgctct acctgttgtt
      361 ggtcagctgt ccaaagagtg aggttcgggc caagttcaag ttctccatcc tgaatgccaa
      421 gggagaagaa accaaagcta tggagagcca gcgagcttat aggttcgtgc aaggcaaaga
      481 ctggggattc aaaaaattca tccgtagaga ttttctcttg gacgaggcca atggacttct
      541 ccctgatgac aagctcaccc tcttctgcga ggtgagtgta gtccaagact ctgtcaatat
      601 ctctgggcag aacactatga acatggtaaa ggtccctgaa tgccggttgg ctgacgagtt
      661 aggagggctg tgggagaact ctcgattcac agactgctgc ttgtgtgtgg ctggccaaga
      721 attccaggct cacaaggcta tcttagcagc tcggtctcca gttttcagtg ccatgtttga
      781 acatgaaatg gaggagagca aaaagaatcg ggttgaaatt aacgatgtag aacctgaagt
      841 ttttaaggaa atgatgtgct tcatctacac ggggaaggca ccaaaccttg acaaaatggc
      901 tgatgatttg ctggcagctg ctgacaagta cgccctggag cgtttgaagg tcatgtgcga
      961 ggatgccctc tgcagtaacc tctctgtgga gaacgctgca gagattctca tcctggctga
     1021 cctccacagc gcagatcagc tgaaaaccca ggcagtggat ttcatcaact atcatgcttc
     1081 ggatgtcttg gagacctctg ggtggaagtc aatggtggtg tcacatcccc acttagtggc
     1141 agaagcgtac cgctctctgg cttccgcaca atgccctttc ctggggcccc cgcgcaaacg
     1201 cctgaagcaa tcctaagatc ctgcctgttg ggagactcca ttcattttcc agcagcagca
     1261 gccaccgttg ctgccactga ctgccaggta gaccgcgcgg tctgtgcggc ttttactctg
     1321 tgtcggggga gatggcacca tggccaccca gactttaaca gcactaaata acttagggga
     1381 gctgggggag ggaagggccc aggactcggg ccactcagcc taatgaaacc ctgttgctct
     1441 gtcaccgtgt gccctttggc ctgaccaagt ttgacactgg gattcagttt aggcgccagc
     1501 ctcaagcaca tcccagcagt ggtacttcgg agaaatcagc atctgactga gcagaacaaa
     1561 tcgtcaggtg cctggagcaa aaaggaaaaa aaaagcagaa acaagtggac atttagtttt
     1621 aagagatgga aaaaggaaag aagaaagatt ttttttcgaa aatcagtttg tggattccag
     1681 tagtatttat gttgaaagaa gcaaatttta gttcaactgt ggatatttgt gaaaactcct
     1741 caccaccacc caagtgtcag aagagctctc tcgctagcac ttactgtttg caagaagcca
     1801 tcctttatcc tctgaaaggt ggcccatggc ggcagaaggg aggaagtcat ctgatctgga
     1861 aagcgagtgt ttgacagtag tggcttctgc agaaattctt actggtatta aaaactggaa
     1921 aaaataattc atccagaatt catactgtct tgataaaaac tatgattctg ttttttagat
     1981 atcgtggaaa atggattttt ttggcatttt tctctgattt tatgttttct tcccttccct
     2041 ttttctgaga gagagggaga gagagaggag agagagagag agagagagag agagagaaag
     2101 agaaagagag gagaaacaaa tacagaaaat acataaaacg aaaagaagag aaaaggaaat
     2161 tttattatta ttgctatgtg aaaaaaaatc ccagcccaga tggcctggct gtttgtacct
     2221 gactcgtcgc ctgcatagga gccggtcctg tcacttctga ttagcccctc ttccaaaggg
     2281 gagacttcaa atgttaactt tttctttttg aaaatataaa taattactat tttgtactgt
     2341 gtggtatctc tggtcttttg tttcattcac ttggcttgcc tcttgggtct cagtttcttg
     2401 cttgtgagat ttcgaagccc tggtttgagc ttcgtcttgc agggattatg ttcagaatgt
     2461 ctaagaagca gtagggagtt atttactctc catagtctca agttttcttt gtgagctcag
     2521 catctgccag tcttttgtcc tccttgaggt tctgccaacc atgtcctggt gagagtctgg
     2581 gaccaggtcc cactccacca aggcaaacaa ttgtagtggg cttcttctgc accctgtgtg
     2641 tgttaatacc tgatcccaaa tctcctttct cctaacaaaa taaaaagaaa tatttagggg
     2701 tcatgaacat ggagattaaa taaagggaaa ttgttgtgt
//
