LOCUS       XM_017597130            2835 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus speckle type BTB/POZ protein (Spop),
            transcript variant X8, mRNA.
ACCESSION   XM_017597130
VERSION     XM_017597130.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017597130.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017597130.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2835
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2835
                     /gene="Spop"
                     /note="speckle type BTB/POZ protein; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 73 ESTs, 5 long SRA reads, 23 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 162 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:287643"
                     /db_xref="RGD:1311613"
     CDS             188..1312
                     /gene="Spop"
                     /codon_start=1
                     /product="speckle-type POZ protein isoform X1"
                     /protein_id="XP_017452619.1"
                     /db_xref="GeneID:287643"
                     /db_xref="RGD:1311613"
                     /translation="MSRVPSPPPPAEMSSGPVAESWCYTQIKVVKFSYMWTINNFSFC
                     REEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKF
                     KFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCE
                     VSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAIL
                     AARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAA
                     ADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVLE
                     TSGWKSMVVSHPHLVAEAYRSLASAQCPFLGPPRKRLKQS"
ORIGIN      
        1 cgctgcgtcg acgtgctgac gacaggacgc ccaggccggt gtgtgtcggt cccggatgtt
       61 gcgggcagta tgaggcgagc gcagggggac agggaccagc agctgtcgcc gccgttctca
      121 gggtgaagaa agaccagaaa tctttgcccc ctgactttgg agacccagtt taaccttcaa
      181 actggcgatg tcaagggttc caagtcctcc acctccggca gaaatgtcga gtggtcctgt
      241 tgctgagagc tggtgctata cacagatcaa ggtagtgaag ttctcctaca tgtggaccat
      301 caataacttt agtttttgcc gggaggaaat gggtgaagtc ataaaaagtt caactttttc
      361 atcaggagcc aatgataagc tgaaatggtg tttgcgagta aacccgaagg ggctggatga
      421 ggaaagcaaa gattacctgt cgctctacct gttgttggtc agctgtccaa agagtgaggt
      481 tcgggccaag ttcaagttct ccatcctgaa tgccaaggga gaagaaacca aagctatgga
      541 gagccagcga gcttataggt tcgtgcaagg caaagactgg ggattcaaaa aattcatccg
      601 tagagatttt ctcttggacg aggccaatgg acttctccct gatgacaagc tcaccctctt
      661 ctgcgaggtg agtgtagtcc aagactctgt caatatctct gggcagaaca ctatgaacat
      721 ggtaaaggtc cctgaatgcc ggttggctga cgagttagga gggctgtggg agaactctcg
      781 attcacagac tgctgcttgt gtgtggctgg ccaagaattc caggctcaca aggctatctt
      841 agcagctcgg tctccagttt tcagtgccat gtttgaacat gaaatggagg agagcaaaaa
      901 gaatcgggtt gaaattaacg atgtagaacc tgaagttttt aaggaaatga tgtgcttcat
      961 ctacacgggg aaggcaccaa accttgacaa aatggctgat gatttgctgg cagctgctga
     1021 caagtacgcc ctggagcgtt tgaaggtcat gtgcgaggat gccctctgca gtaacctctc
     1081 tgtggagaac gctgcagaga ttctcatcct ggctgacctc cacagcgcag atcagctgaa
     1141 aacccaggca gtggatttca tcaactatca tgcttcggat gtcttggaga cctctgggtg
     1201 gaagtcaatg gtggtgtcac atccccactt agtggcagaa gcgtaccgct ctctggcttc
     1261 cgcacaatgc cctttcctgg ggcccccgcg caaacgcctg aagcaatcct aagatcctgc
     1321 ctgttgggag actccattca ttttccagca gcagcagcca ccgttgctgc cactgactgc
     1381 caggtagacc gcgcggtctg tgcggctttt actctgtgtc gggggagatg gcaccatggc
     1441 cacccagact ttaacagcac taaataactt aggggagctg ggggagggaa gggcccagga
     1501 ctcgggccac tcagcctaat gaaaccctgt tgctctgtca ccgtgtgccc tttggcctga
     1561 ccaagtttga cactgggatt cagtttaggc gccagcctca agcacatccc agcagtggta
     1621 cttcggagaa atcagcatct gactgagcag aacaaatcgt caggtgcctg gagcaaaaag
     1681 gaaaaaaaaa gcagaaacaa gtggacattt agttttaaga gatggaaaaa ggaaagaaga
     1741 aagatttttt ttcgaaaatc agtttgtgga ttccagtagt atttatgttg aaagaagcaa
     1801 attttagttc aactgtggat atttgtgaaa actcctcacc accacccaag tgtcagaaga
     1861 gctctctcgc tagcacttac tgtttgcaag aagccatcct ttatcctctg aaaggtggcc
     1921 catggcggca gaagggagga agtcatctga tctggaaagc gagtgtttga cagtagtggc
     1981 ttctgcagaa attcttactg gtattaaaaa ctggaaaaaa taattcatcc agaattcata
     2041 ctgtcttgat aaaaactatg attctgtttt ttagatatcg tggaaaatgg atttttttgg
     2101 catttttctc tgattttatg ttttcttccc ttcccttttt ctgagagaga gggagagaga
     2161 gaggagagag agagagagag agagagagag agaaagagaa agagaggaga aacaaataca
     2221 gaaaatacat aaaacgaaaa gaagagaaaa ggaaatttta ttattattgc tatgtgaaaa
     2281 aaaatcccag cccagatggc ctggctgttt gtacctgact cgtcgcctgc ataggagccg
     2341 gtcctgtcac ttctgattag cccctcttcc aaaggggaga cttcaaatgt taactttttc
     2401 tttttgaaaa tataaataat tactattttg tactgtgtgg tatctctggt cttttgtttc
     2461 attcacttgg cttgcctctt gggtctcagt ttcttgcttg tgagatttcg aagccctggt
     2521 ttgagcttcg tcttgcaggg attatgttca gaatgtctaa gaagcagtag ggagttattt
     2581 actctccata gtctcaagtt ttctttgtga gctcagcatc tgccagtctt ttgtcctcct
     2641 tgaggttctg ccaaccatgt cctggtgaga gtctgggacc aggtcccact ccaccaaggc
     2701 aaacaattgt agtgggcttc ttctgcaccc tgtgtgtgtt aatacctgat cccaaatctc
     2761 ctttctccta acaaaataaa aagaaatatt taggggtcat gaacatggag attaaataaa
     2821 gggaaattgt tgtgt
//
