LOCUS       XM_039098869            4989 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SPARC/osteonectin, cwcv and kazal like
            domains proteoglycan 2 (Spock2), transcript variant X3, mRNA.
ACCESSION   XM_039098869
VERSION     XM_039098869.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4989
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4989
                     /gene="Spock2"
                     /note="SPARC/osteonectin, cwcv and kazal like domains
                     proteoglycan 2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 mRNA, 76 ESTs, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:361840"
                     /db_xref="RGD:1308568"
     CDS             252..1196
                     /gene="Spock2"
                     /codon_start=1
                     /product="testican-2 isoform X3"
                     /protein_id="XP_038954797.1"
                     /db_xref="GeneID:361840"
                     /db_xref="RGD:1308568"
                     /translation="MCISRKKLEHRIKQPSLKLHGGKDSICKPCHMAQLASVCGSDGH
                     TYSSVCKLEQQACLSNKHLAVRCEGPCPCPTEQSTASTTDSKSETCTGQDLADLGDRL
                     RDWFQLLRENSKQNGSASSSSSPAGLDKSLGASCKDSIGWMFSKLDTSGDLFLDQTEL
                     AAINLDKYEVCIRPFFNSCDTYKDGRVSTAEWCFCFWREKPPCLAELERTQIQEAAKK
                     KPGIFIPSCDEDGYYRKMQCDQSSGDCWCVDQLGLELTGTRMHGNPDCDDIVGFSGDF
                     GSGVGWEDEEEKETEEAGEEAEEEEGEAGEADDGGYIW"
ORIGIN      
        1 cccttggcct ctctcctctt ctccacccac tgtgtgaatt ggatgtgtaa ataaggcaga
       61 agaagcagaa acatgtggct gggtgtcacc agagcaacgc tagactctcc aaggaggtag
      121 aggatgatta catcaagagt tgggaggaca atcagcaagg agacgaagct ctggatacca
      181 ccaaggaccc ctgccagaag gtgaagtgca gtcgtcacaa ggtgtgtgtc gctcaaggct
      241 accagcgcgc catgtgtatc agccgcaaga agctggaaca caggatcaag cagccttctt
      301 tgaaactcca cggaggcaaa gactccatct gcaagccctg tcacatggcc cagctagctt
      361 ccgtctgtgg ttccgatggc catacctaca gttcagtgtg caagctggag cagcaggcat
      421 gtctgagtaa caagcacctg gcggtgaggt gtgagggccc ctgcccctgt cccacggagc
      481 agtctactgc gtctaccacc gacagcaagt cagagacctg cacagggcag gacctggccg
      541 acctggggga taggcttcgt gactggttcc agctccttcg tgagaactcg aagcagaatg
      601 gctcagccag cagctcctct agccctgcag ggttggacaa gagcctaggg gccagttgca
      661 aggactccat cggttggatg ttctctaagc tggacaccag tggagatctc ttcctggacc
      721 agacagaact ggctgccatc aacctggaca aatacgaggt ctgcatccgc cccttcttca
      781 actcctgcga cacctacaaa gatggccgag tctctactgc tgagtggtgc ttctgtttct
      841 ggagggagaa gcccccctgc ctggcagagc tggagcgcac acagatccag gaggcagcca
      901 agaagaagcc aggtatcttc attccgagct gtgatgaaga tggttactat cggaagatgc
      961 agtgtgacca gagcagtggt gactgctggt gcgtggacca gctgggcctg gagctgaccg
     1021 gcacacgcat gcatgggaac cctgactgtg atgacatcgt gggtttctcc ggggactttg
     1081 gaagcggtgt cggctgggag gatgaggagg aaaaggagac agaagaggca ggcgaggagg
     1141 ctgaggagga ggagggtgag gcgggtgagg cagatgacgg aggctacatc tggtagatgg
     1201 ccctcgaagg cctcggcagg ccagggtgcc gacggccaga aagacaggcc agaagagacc
     1261 tggacagcag caggcaactt agcaaatgga tccggaagtc agcgtgaagg accctggctc
     1321 cagtggggac tggagagtgt ggcttgtgtg actggtgtgt gtgtgtgtgt gtgtgtgtgt
     1381 gtgtgtgtgt gtgtgtgtga tgtgagtcac ctagaggtcc cttccttcct gtggttattt
     1441 ctttcccatt gttatcgatg ttcaaatgca cactttcacg cacatggaca caccaacaga
     1501 ccaaaatcaa tgtgatgtga tgccccagat cctgtccctc aggccaacac ctcgacccag
     1561 gtcctgccct gctcaatcaa ccttaccccc tcctgccttt cttccttcct ctcctgaggc
     1621 cagagaggga gggcaggaag ctggaagctg agcatcctcc ccaaatcggg ctgatttgat
     1681 gtgaaagccc caccatggtg tgtggtggtg aggcaggacc tgttcacaca acaaggctta
     1741 cccttctgct gacatccaga gagctgcttg tgggtgtgtc cagccgtgac ctctgggctg
     1801 tacgtggcta aggatagcta tccatgtggc ccaacacaaa acaggaaact tacttaaaaa
     1861 tagggttttt tggggctggg gatttagctc agtggtagag cgcttaccta ggaagcgcaa
     1921 ggccctgggt tcggtcccca gctccgaaaa aaagaaccaa aaaaaaaaaa aaatagggtt
     1981 ttttggttgc tgcttttggg tttttgataa ttggattggg gagttcttga atgtgggctt
     2041 tgtagatgac aatactatta caacatcaaa aggttggaca cacccaatag gttatctctt
     2101 agcctagtcc tgagtaacca gagatagccc agcagaacag gcagagacca tgaggcagag
     2161 gaggagggta ggtcccttga taccaggcct cagattaacc cagtcagcac ctgttgcctc
     2221 ctggggctct aggctgcttt cttggcaaat gggggctgtc atcatgcagt tcagttttga
     2281 gggctcgcag ccatgacctc tgtttcctgg caagagtccc tttgtcctaa ggagcagagg
     2341 aacagaaagc agcacacgtc tgcccacctc ctccctgacc ctgtaggaaa cgatcccctc
     2401 ttgtccagag aaaggtatgt ctctgagatc ctgtgagaaa gcatcaggaa gctgtgactt
     2461 cctgtgccca gagatagtcc tggaggagag gccccgatac cttagtcctc tcaaccatgg
     2521 cttccctctg tctcaagggt ccccaagatg gccctactag agccgtgccc cagactctat
     2581 ttaaagcccc accacatata tgaatagaga gcaatgtatc agaggggacc acactgggca
     2641 gctaggccct gaggccatgc ctcagtgtga ggggctttta cccagatgcc ctgtggggtt
     2701 ttgtgtgttt attgattccc actgcacccc ctctcaaagg aaattcctta aaatatttga
     2761 tgaagaattt cttacctgta cttgggccac tgataccctt tggtatgtgc gtgcgtgtgt
     2821 gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtga gagagagaga gagagagaga
     2881 gagagagaga gagagagaga gaacaccgag ggccaccctg acggctaggg agagtgagga
     2941 cagccccctg tgtggtggaa ggctgggcag ctactggggt tcttgtgcta gggtttccag
     3001 gacaaagccc cagtctggct gtcccccagc atctcagggg cactagctgg ttacatccac
     3061 tgagtgtgga ctttagggaa gagcctcatc cttcccatcc cttcccgcca ccctggaatg
     3121 gccaccttcc ttgtcatctc ctggggcaaa tacagaaatg ccactaagct ccataaagtg
     3181 cttctcattc cacaacacag ttctgactct ccgggtgact gtccctgatc ccatcccctt
     3241 cctcctccct cccttcctca ggcctctgca accatcctct ggtccctggc tcagtcacat
     3301 cagccctctg cattatagaa gcagccatcc ctcctcctcc tcctcctcct cctcctcctc
     3361 ctcttcctcc tcctcctcct cctcttcctc ctcctcctcc tcctcttcct cctcctcttc
     3421 ctcctcctcc tcctcctctt cctcctcctc ttcctcctcc tcctcctcct cttcctcctc
     3481 ctcctcccct tcccccaccc cctcctccag ctggagttac ttgaaacttc ctgctctcga
     3541 taggacggag tctgattctt cctctgccgt agctggattc ccagaacatc ccgggtagct
     3601 gtgaaggatt tcagactttc tggggtgggg atggggtgtt gtggaggaag aagcatcccc
     3661 ttctttcgcc ctgccccact gagggggctg tgctctgtgt gtccctggat cttctggttt
     3721 tgtatctgac tttgtaaata tgttttagga agaaagcaga aggtatggag cttgactgtg
     3781 gcaggcctca ggggtccaga agtttgtccc cctctaaagt gtcccccccg tactgccctt
     3841 cgcccccact gagactgagt ctcacaaggg tagacagagc agttgtccct ggtggggccg
     3901 aaggtcccca agtagcttct ggtttcctca ggaacgaggt cccaggccag actattgtca
     3961 gtcctaaggc ctcatccttg aataagctgc ctacccagtt cccccatgct cctgcctgct
     4021 ctcgctccct tgctatgggc aggagagcta gggctgtgct ggaaagagtt cagccaaact
     4081 acagcagcac cccgccttgc cgggccctgg agctgcccta ctaagaccct ccatagccct
     4141 tgggtgctgg gagggatggc gtaagttggg gcagtttgag gttggaggga gtaaatgtgc
     4201 cttgagagac actcagaggt cccagggagc tctggcagga ggcaaagttg gtgagagagt
     4261 catgggacat cttgacttcc ctccagtgtt tcataggagt ccacgtgatg ggtgggcaca
     4321 ggtccgtcct tactccggcc ccctccctcc cctggtttgg gttggtaccc gtctggcttt
     4381 tcttgagctt tatctgcttt cggcttctcc tctaagtggg tagatggggt cttttgatat
     4441 cggctcccca aagcctgagc ccacaggcct gggagagaac caggggcccg tctttgatac
     4501 ctgggtcatc acgaaccctt ctgcctgcag ttgtcccaag gaaggacctg ggggtgcaaa
     4561 aggagattca agacatctgt aacaagtcag gcagagcaac ccgcttctta gcccgtgtcc
     4621 cacttaaact gagcttagag ttaaacattg tggtcaagtg cttgggttcc gtctgtagat
     4681 ttaagtgctg acgttgtatt tcccagtaat cttagatgtc ttttgaaaaa ctgaacaagt
     4741 gttagacctg tgtgtgcgtt ggtgggcact caagcatccc atgggtgacc ccgttctctc
     4801 cccttcctcc gtgacacatc cactcctgcc ccgcccaccc ccacttgcct ccacccgggg
     4861 cccctcactt tgctgtggtc tttatctgcc tgttactcag cctaaggaaa caagttcact
     4921 ctacacacgc ataaaagaaa gcaaatgtta tttttaagaa aatggaaaat aaaaacttta
     4981 taaacatca
//
