LOCUS       XM_039111493            2024 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SPOC domain containing 1 (Spocd1),
            mRNA.
ACCESSION   XM_039111493
VERSION     XM_039111493.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 4% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2024
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2024
                     /gene="Spocd1"
                     /note="SPOC domain containing 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, 2 Proteins, and 95% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:313060"
                     /db_xref="RGD:1560989"
     CDS             1..1893
                     /gene="Spocd1"
                     /codon_start=1
                     /product="SPOC domain-containing protein 1"
                     /protein_id="XP_038967421.1"
                     /db_xref="GeneID:313060"
                     /db_xref="RGD:1560989"
                     /translation="MASVATQLSSRTKQPDFDTCFATGSGEHFCSGLACPHSTQELPN
                     LELREDEVEGIAEGIEAALFHLTQDTNLRYKSKYRNLLFNLRDPRNDLFLKVAHCDVT
                     PKDLVQMSSIQLAPKELSRWRDQEKRRSLDIIEQQQKEPYRLPASKLTHKGEVEIPRD
                     SDQMLTLEDLMEPMVPRECSLQALTTPLEDTTDWHQHHLCDSSCQICTGGKGGRKADS
                     GSQPELQAGISHSMDQKSSTKLPAFSPAAMNEEENTIQKAPSPVPVSSPEMLKVGKTP
                     PKEPQDRLQMPAGPKPVPPSPPPWEGSLDMFSIKHFRTKAQLISGHSCQLVQGLPEVI
                     RSAGRLPPNHIWDLLDSMGPSRAKDICVVRLSPHGSRDIQNYRLLYSYLNDKQCHCLA
                     TVHHVKMVLMPLPAFEPLPARLRPLGGPGLETAHTSLLLAVLFPEDELPDTALSSPVW
                     SKAPKTVSFSKKVERIRYSSEDRRSEATPRGPSPHEEEPKQSLAQGNLAPRSVCAPQS
                     LSRGRGSEPGWGQWSSEAGWHYSQHYSQHPNPAGPMFPGISRGQHLHRASCFHHDLHQ
                     HLKVLVTMSHQFQASLRPQGQDSCLPSTVVSVVPDPPGSSSGPLDGGGSGCPLPEGPD
                     PLELPE"
ORIGIN      
        1 atggcttcag ttgcaactca gctgtctagc aggaccaagc agcctgactt tgacacttgc
       61 tttgccacag ggagtgggga acatttctgc tcagggcttg cttgtcccca cagcacccag
      121 gagcttccca acctggagtt gagggaagac gaggtggagg gcattgcaga aggcattgag
      181 gctgccctct tccacctgac ccaggacacc aacctccgct acaagagcaa gtaccgtaac
      241 ctgctcttca acctgcggga tccccgaaat gacctgtttc tcaaagtggc tcactgtgat
      301 gtcaccccta aggacctggt acagatgagc tcaatccagc tggccccgaa ggagctgtcc
      361 cgctggcggg accaggagaa gagaaggagc ctggatatca ttgagcaaca acagaaggaa
      421 ccgtacaggc ttcccgcctc caaactgact cacaagggcg aggtagagat ccctcgggac
      481 tcggaccaga tgctgacctt ggaagacctg atggaaccca tggtgcccag agagtgcagc
      541 ctacaggccc taacgacccc cctggaggac accacagatt ggcatcagca ccacctctgt
      601 gactccagct gccagatctg cacgggtggg aagggaggca ggaaggctga cagtgggagc
      661 cagccagagc tacaagctgg catcagccac agcatggatc agaaatcctc aactaaactg
      721 ccagccttct ccccggccgc catgaacgag gaggaaaaca ccatccagaa agccccaagt
      781 ccagttcctg tgtcctctcc agagatgctc aaagttggga agacaccccc taaggaacca
      841 caagacaggc tccagatgcc tgctgggccc aaacctgtcc cgcccagccc tccgccctgg
      901 gagggttcac tggacatgtt ctccatcaag cacttccgga ccaaggcgca gctgatctcc
      961 gggcacagct gtcagcttgt ccagggtctg ccagaggtca ttcgctcagc aggccgcctc
     1021 cctccaaacc acatctggga tcttctagac agtatgggcc catccagggc aaaggacatc
     1081 tgtgtggtca gattgagtcc ccacgggtct cgggacatcc agaactaccg tttgctctac
     1141 tcctacctca acgacaagca gtgccactgc ctggcgaccg tgcatcatgt gaaaatggtc
     1201 ctgatgccct tgcctgcctt tgagcctctg ccagccaggc tgcgccctct ggggggccca
     1261 ggtcttgaaa ctgctcacac gagcctgtta ctggctgtgc tgttcccaga ggatgagctt
     1321 ccagacacag ctctgtccag ccccgtgtgg agcaaggctc caaagaccgt gtctttcagc
     1381 aaaaaggtgg aaaggatccg atactcatca gaggacagga ggtcagaggc caccccgaga
     1441 ggaccatctc cccatgagga ggagccaaag cagagcttgg cccagggcaa cctggctcca
     1501 aggagtgtgt gtgctccaca gagcctctcc agaggcaggg gaagtgagcc tgggtgggga
     1561 cagtggtcct cagaagcagg ctggcactac tcccagcact actcccagca tcccaatcca
     1621 gcaggaccca tgttccctgg catcagccgt ggacagcacc tccacagggc ctcctgtttc
     1681 caccatgacc tacaccagca cctcaaggtc ttagtgacca tgagtcacca gttccaggcc
     1741 tcactgaggc cccaaggcca ggattcctgc ctcccatcta ccgtagtatc tgtagttcca
     1801 gatccccctg ggtcttcttc aggccctttg gatggaggtg gctctggctg tcccctgcca
     1861 gaggggcctg accctttaga gcttccagaa taggagtgtt gaatcctttc ccaatgctga
     1921 accccaggaa cgacaagtga gctctcccac acctgcccag tttgtgtctg ttctgcagtc
     1981 tgtttgatgt tgatttttgg ttcaataaaa acttggcaaa gtaa
//
