LOCUS       XM_039105609            1323 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SPO11 initiator of meiotic double
            strand breaks (Spo11), transcript variant X1, mRNA.
ACCESSION   XM_039105609
VERSION     XM_039105609.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039105609.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1323
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1323
                     /gene="Spo11"
                     /note="SPO11 initiator of meiotic double strand breaks;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:366261"
                     /db_xref="RGD:1306454"
     CDS             79..1284
                     /gene="Spo11"
                     /codon_start=1
                     /product="meiotic recombination protein SPO11 isoform X1"
                     /protein_id="XP_038961537.1"
                     /db_xref="GeneID:366261"
                     /db_xref="RGD:1306454"
                     /translation="MALAPMGPEASFFDALDRHRASLLAMVKKGAGETPDRATRVPSS
                     SEVLTSIENIIQDIIKSLARNEAPAFTIDNRSSWENMTFEDAFGLQMRPQCTTRKIKS
                     DSLRSVRKFALILKILSMIYKLIQSNTYATKRDIYYTESQLFRNQAAVDSIIDDISCM
                     LKVPRRSLHVISTSKGLIAGNLRYVEEDGTQVQCMCSATATAVPSNIQGMQNLVTDAK
                     FLLIVEKDATFQRLLDDNFCSRMSPCIMVTGKGTPDLNTRLLVKKLWDTFHIPVFTLV
                     DADPYGIEIMCIYKYGSMSMSFEAHNLTVPTIRWLGLLPSDIKRLNIPKDSLIPLTRR
                     DQMKLDSILRRPYITYHPFWKKEHSLCSMKCLTSNRMQAALRGGNERVTRRRLLVLPL
                     ASCTGTLPC"
ORIGIN      
        1 gagtgcgcat gcgcatatgc agagcgcggg aaggttcgca ggggcaggag gcctccgagc
       61 agctcagcgt cagccgtcat ggcgttagcg cctatggggc ccgaggcctc gttcttcgac
      121 gccttggatc ggcacagggc ttccctgttg gccatggtga agaaaggcgc aggggagacc
      181 cctgacaggg ccacccgtgt gccctctagt tctgaggttc ttacgtctat agaaaatatt
      241 atccaagaca taatcaaaag cttggcaaga aatgaagcgc ccgccttcac aatagacaac
      301 agatcgagct gggaaaacat gacgttcgaa gatgcttttg gccttcagat gagacctcag
      361 tgtaccacaa gaaaaatcaa aagcgattca ctaagatcag ttagaaaatt tgctctaatt
      421 ctgaaaatat tgtccatgat ttataaatta atacagagca acacttacgc aaccaagaga
      481 gacatatact acactgagag ccagctcttc aggaaccagg ctgcagtgga cagcattata
      541 gatgacattt cctgtatgct gaaagtgccc aggaggagtc tgcatgtgat atctacatcg
      601 aagggattga ttgctggcaa cttgagatac gtggaggaag atggtaccca agtccagtgc
      661 atgtgtagtg ccacggctac tgctgtgcca tctaacattc aagggatgca gaatctggtc
      721 acagatgcga agtttctgct aatcgtagag aaggatgcaa catttcagcg gctcctggac
      781 gacaacttct gcagcaggat gtccccgtgc atcatggtta cgggaaaggg tactccagat
      841 ctgaacacga ggctcttggt aaagaagctg tgggacacct ttcatattcc tgtcttcaca
      901 ctggtagatg ctgaccccta cggcatcgag ataatgtgca tctataagta cggatccatg
      961 tccatgtctt ttgaagccca caatctcact gtcccaacaa tcagatggct tggtctcctc
     1021 ccttctgata ttaaaaggtt aaatatacct aaggatagtt tgatcccact gacaaggcgt
     1081 gaccagatga agctggacag tatcctgagg aggccttaca ttacctatca ccccttctgg
     1141 aaaaaagagc acagcttgtg cagcatgaaa tgtctcacta gtaacagaat gcaagcggcc
     1201 ctgagagggg gcaacgaaag ggtcacaagg cgccgtttgc tagtacttcc tcttgcctca
     1261 tgtacaggca ccttgccctg ttaatgcatc cttgaaacta ataaaactta ttataaataa
     1321 gta
//
