LOCUS       NM_001109035            1829 bp    mRNA    linear   ROD 29-OCT-2024
DEFINITION  Rattus norvegicus SPNS lysolipid transporter 3,
            sphingosine-1-phosphate (Spns3), mRNA.
ACCESSION   NM_001109035 XM_001080208 XM_573133
VERSION     NM_001109035.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1829)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473948.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_573133.2, XM_001080208.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5756307, SAMEA5760383
                              [ECO:0006172]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1829
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q24"
     gene            1..1829
                     /gene="Spns3"
                     /gene_synonym="RGD1561884"
                     /note="SPNS lysolipid transporter 3,
                     sphingosine-1-phosphate"
                     /db_xref="GeneID:497946"
                     /db_xref="RGD:1561884"
     exon            1..303
                     /gene="Spns3"
                     /gene_synonym="RGD1561884"
                     /inference="alignment:Splign:2.1.0"
     CDS             93..1571
                     /gene="Spns3"
                     /gene_synonym="RGD1561884"
                     /note="spinster homolog 3; SPNS sphingolipid transporter
                     3"
                     /codon_start=1
                     /product="protein spinster homolog 3"
                     /protein_id="NP_001102505.1"
                     /db_xref="GeneID:497946"
                     /db_xref="RGD:1561884"
                     /translation="MSRECIKPQTGGPQSQSLSPGGQYGALASGNCLPPSTSASWSLP
                     RWRAYLAAAVLCYVNLLNYMNWFIIPVFIGCLLVSAPVFGYLGDRYSRKAILSFGVLL
                     WSGAGLSSSFISYQYSWLFFLSRGIVGTGAASYSTIAPTVLGDLFVKDQRTCALAVFY
                     IFIPVGSGLGYVLGSTVAELTGNWRWALRIMPCLDAVALALLILLVPDLPRGAAEKQG
                     EVPVRAPRSSWYEDVRYLGRNWSFVFSTLGVTAIAFVTGALGFWAPKFLFEARVVHGL
                     QLPCFQEQCHSQDSLIFGALTVATGIIGVMLGAEASRKYKKVNPRAEPLICASSLFAT
                     APCLYLALILASRTLLASYVFLALGELLLSCNWAVVADILLSVVVPRCRGTAEALQIT
                     VAHVLGDAGSPYLTGLISSVLQAERPNSYLQHFLSLQHSFLCCAFAIVLGGGCFLLTA
                     LHLERDQARARQPGEETLDSKDIARRDTERQGLLSGTSTPTE"
     exon            304..440
                     /gene="Spns3"
                     /gene_synonym="RGD1561884"
                     /inference="alignment:Splign:2.1.0"
     exon            441..592
                     /gene="Spns3"
                     /gene_synonym="RGD1561884"
                     /inference="alignment:Splign:2.1.0"
     exon            593..659
                     /gene="Spns3"
                     /gene_synonym="RGD1561884"
                     /inference="alignment:Splign:2.1.0"
     exon            660..808
                     /gene="Spns3"
                     /gene_synonym="RGD1561884"
                     /inference="alignment:Splign:2.1.0"
     exon            809..961
                     /gene="Spns3"
                     /gene_synonym="RGD1561884"
                     /inference="alignment:Splign:2.1.0"
     exon            962..1151
                     /gene="Spns3"
                     /gene_synonym="RGD1561884"
                     /inference="alignment:Splign:2.1.0"
     exon            1152..1217
                     /gene="Spns3"
                     /gene_synonym="RGD1561884"
                     /inference="alignment:Splign:2.1.0"
     exon            1218..1316
                     /gene="Spns3"
                     /gene_synonym="RGD1561884"
                     /inference="alignment:Splign:2.1.0"
     exon            1317..1488
                     /gene="Spns3"
                     /gene_synonym="RGD1561884"
                     /inference="alignment:Splign:2.1.0"
     exon            1489..1829
                     /gene="Spns3"
                     /gene_synonym="RGD1561884"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgggagcctg caggaagtga cttggtgcca agccgatgta gcttagttcg gcacccgttc
       61 tgacagagaa gttgcatctg gcactgctga aaatgtccag agagtgtatc aaacctcaga
      121 caggagggcc acagagccag agcctgagtc caggtgggca gtatggggcc ttggcttcag
      181 gtaactgtct gcctccctcc acatctgcct cctggagcct gccccgctgg agagcgtact
      241 tggctgcagc tgttctctgt tacgtcaacc ttctgaacta catgaactgg ttcatcatcc
      301 cagtcttcat cggctgcctg ctggtgtctg cacctgtgtt tggctacctg ggtgaccgat
      361 acagccgcaa ggccatactg agcttcgggg tcctgctgtg gtcgggggct gggctctcca
      421 gctccttcat ctcctaccag tattcctggc tcttcttcct gtcccggggg atcgtgggta
      481 ccggggcagc aagctattcc accattgcac ccaccgtcct gggtgacctc ttcgtgaagg
      541 accagcggac ctgtgcactg gctgtctttt acatcttcat ccctgttgga agtggtctgg
      601 gctatgtgct gggatcaact gtggcggagc tgacagggaa ctggcgttgg gccctccgaa
      661 tcatgccctg cttggatgct gtggccttgg ctctgctcat cttgctggtt ccagacctac
      721 cccgaggagc agctgagaaa cagggagaag tgcctgtgag ggctccgagg agcagctggt
      781 atgaggatgt cagatacttg gggagaaact ggagttttgt gttttcaacc cttggagtga
      841 cagccatagc gtttgtgact ggagctctgg gcttctgggc acccaagttt ctgtttgaag
      901 ctcgcgtggt ccatggccta cagcttccct gcttccaaga gcagtgccac agccaggaca
      961 gcctgatttt tggggcattg accgtggcaa ctggtattat tggtgtcatg ctgggagcag
     1021 aggcctcaag aaagtacaag aaggtgaacc ccagggctga gcccctcatc tgtgcttcta
     1081 gtctgtttgc cacagctcct tgcctctacc tggctctcat cttggcctca cggaccctcc
     1141 tggcctccta tgtgttcctg gccctggggg agctccttct gtcttgcaac tgggcagtag
     1201 ttgctgatat cctgttgtcg gtggtggtgc ccaggtgccg gggcacggca gaggcgctcc
     1261 agatcacagt agcccacgtc ctgggagacg ctggcagccc ctacctcact ggacttatct
     1321 ccagtgtcct gcaggctgag cgccccaact cctacctgca acacttcctc agccttcagc
     1381 acagcttcct gtgttgcgcc ttcgccatcg tgctgggcgg tggctgcttc ctgctgactg
     1441 cactgcacct ggaaagagac caggcccggg ccaggcaacc tggcgaagaa actctggaca
     1501 gcaaggacat agccaggagg gacactgaga gacaagggct gctatctggt accagcaccc
     1561 cgacagagta gccctgggcc cctgtcttgc agtgagcagg ctacatcctt ctggggacct
     1621 cgcccatctt ggctgtgact cagggacccc agctaagcta cactcaccac cttttcaatc
     1681 cctgctagag agctgccaat gcccaggagc tggttagatt gagctggctg gattgagctg
     1741 gcactactct ctagggagtc tgggctctgt gtctgcaccg accagggaga ccaggccctt
     1801 attaaagcat gatcagtgca aagccctta
//
