LOCUS       NM_001039208            2269 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Rattus norvegicus SPNS lysolipid transporter 1, lysophospholipid
            (Spns1), mRNA.
ACCESSION   NM_001039208 XM_341927
VERSION     NM_001039208.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2269)
  AUTHORS   Schroder,B., Wrocklage,C., Pan,C., Jager,R., Kosters,B.,
            Schafer,H., Elsasser,H.P., Mann,M. and Hasilik,A.
  TITLE     Integral and associated lysosomal membrane proteins
  JOURNAL   Traffic 8 (12), 1676-1686 (2007)
   PUBMED   17897319
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CK604160.1, CA339235.1, BU671623.1 and BC087072.1.
            
            On Apr 18, 2009 this sequence version replaced NM_001039208.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-427               CK604160.1         1-427
            428-817             CA339235.1         1-390
            818-1155            BU671623.1         1-338
            1156-2269           BC087072.1         1156-2269
FEATURES             Location/Qualifiers
     source          1..2269
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q36"
     gene            1..2269
                     /gene="Spns1"
                     /gene_synonym="RGD1305613"
                     /note="SPNS lysolipid transporter 1, lysophospholipid"
                     /db_xref="GeneID:361648"
                     /db_xref="RGD:1305613"
     exon            1..587
                     /gene="Spns1"
                     /gene_synonym="RGD1305613"
                     /inference="alignment:Splign:2.1.0"
     CDS             347..1933
                     /gene="Spns1"
                     /gene_synonym="RGD1305613"
                     /note="spinster homolog 1; SPNS sphingolipid transporter
                     1; RSpin1"
                     /codon_start=1
                     /product="protein spinster homolog 1"
                     /protein_id="NP_001034297.2"
                     /db_xref="GeneID:361648"
                     /db_xref="RGD:1305613"
                     /translation="MAGSDTAPFLSQADDPDDGPAPGHPGLPGPMGNPKSGELEVPDC
                     EGLQRITGLSRGHSTLIVVVLCYINLLNYMDRFTVAGVLTDIEQFFNIGDGSTGLIQT
                     VFISSYMVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTLGSSFIPREHFWLLLLTRGLV
                     GVGEASYSTIAPTLIADLFVADQRSRMLSIFYFAIPVGSGLGYIAGSKVKDLAGDWHW
                     ALRVTPGLGVLAVLLLFLVVQEPPRGAVERHSGSPPLSPTSWWADLKALARNPSFVLS
                     SLGFTAVAFVTGSLALWAPAFLLRSRVVLGETPPCLPGDSCSSSDSLIFGLITCLTGV
                     LGVGLGVEISRRLRRFNPRADPLVCAAGLLGSSPFLFLSLACARGSIVATYIFIFIGE
                     TLLSMNWAIVADILLYVVIPTRRSTAEAFQIVLSHLLGDAGSPYLIGLISDRLRRSWP
                     PSFLSEFRALQFSLMLCAFVGALGGAAFLGTAMFIENDRRRAQLHVQGLLHETEPSDD
                     QIVVPQRGRSTRVPVSSVLI"
     exon            588..653
                     /gene="Spns1"
                     /gene_synonym="RGD1305613"
                     /inference="alignment:Splign:2.1.0"
     exon            654..790
                     /gene="Spns1"
                     /gene_synonym="RGD1305613"
                     /inference="alignment:Splign:2.1.0"
     exon            791..942
                     /gene="Spns1"
                     /gene_synonym="RGD1305613"
                     /inference="alignment:Splign:2.1.0"
     exon            943..1009
                     /gene="Spns1"
                     /gene_synonym="RGD1305613"
                     /inference="alignment:Splign:2.1.0"
     exon            1010..1155
                     /gene="Spns1"
                     /gene_synonym="RGD1305613"
                     /inference="alignment:Splign:2.1.0"
     exon            1156..1311
                     /gene="Spns1"
                     /gene_synonym="RGD1305613"
                     /inference="alignment:Splign:2.1.0"
     exon            1312..1501
                     /gene="Spns1"
                     /gene_synonym="RGD1305613"
                     /inference="alignment:Splign:2.1.0"
     exon            1502..1567
                     /gene="Spns1"
                     /gene_synonym="RGD1305613"
                     /inference="alignment:Splign:2.1.0"
     exon            1568..1666
                     /gene="Spns1"
                     /gene_synonym="RGD1305613"
                     /inference="alignment:Splign:2.1.0"
     exon            1667..1838
                     /gene="Spns1"
                     /gene_synonym="RGD1305613"
                     /inference="alignment:Splign:2.1.0"
     exon            1839..2185
                     /gene="Spns1"
                     /gene_synonym="RGD1305613"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acatgacctg ctcttgggca acatggcggc agttgtagtg ctgcttttgg actgagcaac
       61 agcgagtgtg gcgcactcat tcccggggtg aggagtgcgt cagcgtgaga agaggggctg
      121 ggtcgtggtc ttcctgctcc tgtcccagca tcacctgcat ctcacgtgtc ctctcctctg
      181 tcggaaccag agggaatgac gaaacccagg gcttttcgca gtggtgcact gtgcatcgga
      241 gcacgctcct aggcgacggt gggcaagtct cctcgaagtc ctttctccaa cctccttccg
      301 tcggaggtgg ggccgaggcg tgggcggttg cgattcccca gggaccatgg ccggatccga
      361 cacggcgccg ttcctcagcc aagcagatga cccagatgac gggccagcgc ctgggcatcc
      421 ggggttgcca gggcccatgg ggaatcccaa gtccggggag ctcgaggtcc cagactgtga
      481 ggggctacag cgcatcactg gtttatctcg gggccattcg accctcatag tggtggtgct
      541 gtgctacatc aacctcctga actacatgga tcgcttcacc gtggctgggg ttcttacaga
      601 catcgagcag ttctttaaca tcggagatgg tagtactggc ctcatccaga ctgtgttcat
      661 ttccagttac atggtgttgg caccagtgtt tggctacctg ggtgacaggt acaatcgaaa
      721 gtacctcatg tgcgggggca ttgccttctg gtccctggtg acactggggt catccttcat
      781 ccccagagag catttctggc tgctcctcct gacccggggc ctggtggggg tcggggaggc
      841 cagttactcc accattgcgc ccaccctgat cgccgacctc ttcgtggcag accagcggag
      901 tcggatgctc agcatcttct attttgccat ccctgtgggc agcggtctag gttacattgc
      961 tggctccaaa gtgaaggatt tggctggaga ctggcactgg gctttacggg tgacaccagg
     1021 tctaggcgtg ctggccgtcc tgctgctgtt cctggtggta caagagcccc cgagaggagc
     1081 tgtggaacgc cactcaggtt caccacccct gagccccacc tcttggtggg cagatctgaa
     1141 ggcactggca cgaaatccta gtttcgtcct gtcttccctt ggcttcaccg ctgtggcctt
     1201 tgtcacgggc tccctggctc tctgggcccc agcattcctg ctgcgctccc gtgttgttct
     1261 gggagagact cctccctgtc tccctggaga ctcatgctct tcctctgaca gtctcatctt
     1321 tggactcatc acttgcctga ctggagtcct gggtgtgggc ctgggtgtgg aaatcagccg
     1381 ccgccttcgc cgcttcaacc ctcgggctga cccactggtg tgtgcagccg gcctcctggg
     1441 ttcctcgcct ttcctcttcc tgtccctggc ctgtgcccga ggtagcatcg tggccaccta
     1501 tatttttatc tttattgggg agaccctgtt gtccatgaac tgggccattg tggctgacat
     1561 cctgttgtat gtggtgatcc caactcgacg gtccacagct gaggccttcc agatagtgct
     1621 gtcccacttg ctaggtgatg cggggagccc ttacctcatt ggtctaatct ctgaccgcct
     1681 ccgaaggagc tggccccctt ccttcctgtc cgagttccgg gctctgcagt tctctctcat
     1741 gctctgtgct ttcgtcgggg ccctgggtgg cgcggccttc ctgggcaccg ccatgttcat
     1801 tgagaatgac cgccggcggg cacaactcca cgtgcagggt ctgttgcatg agaccgagcc
     1861 ctcagatgac cagattgtgg tacctcagcg aggccgttct acccgagtcc ctgtgtccag
     1921 tgtgctcatc tgaggagccg ttgctcgagc ccagccatag atgtcacagc tggtcctggg
     1981 cccaccccaa acggttccca ggcagaagcc ctcaccaggc ccaggtccaa gaaggaagcc
     2041 ctgggataga tcccagctcc cagacactac atgggcagcc cagggaagag atgggtgtcc
     2101 agaaatgggg gttgtcctct ctactagggt agcccaaggg gtttggtgct atttgtaacg
     2161 gatgtaaata aaatttgtaa tcagaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     2221 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//
