LOCUS       NM_001419511            1068 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus sperm microtubule inner protein 6 (Spmip6),
            transcript variant 1, mRNA.
ACCESSION   NM_001419511 XM_008763648
VERSION     NM_001419511.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1068)
  AUTHORS   de Mateo,S., Castillo,J., Estanyol,J.M., Ballesca,J.L. and Oliva,R.
  TITLE     Proteomic characterization of the human sperm nucleus
  JOURNAL   Proteomics 11 (13), 2714-2726 (2011)
   PUBMED   21630459
REFERENCE   2  (bases 1 to 1068)
  AUTHORS   Matsuoka,Y., Miyagawa,Y., Tokuhiro,K., Kitamura,K., Iguchi,N.,
            Maekawa,M., Takahashi,T., Tsujimura,A., Matsumiya,K., Okuyama,A.,
            Nishimune,Y. and Tanaka,H.
  TITLE     Isolation and characterization of the spermatid-specific Smrp1 gene
            encoding a novel manchette protein
  JOURNAL   Mol Reprod Dev 75 (6), 967-975 (2008)
   PUBMED   18163442
REFERENCE   3  (bases 1 to 1068)
  AUTHORS   Yoshisue,H., Puddicombe,S.M., Wilson,S.J., Haitchi,H.M.,
            Powell,R.M., Wilson,D.I., Pandit,A., Berger,A.E., Davies,D.E.,
            Holgate,S.T. and Holloway,J.W.
  TITLE     Characterization of ciliated bronchial epithelium 1, a ciliated
            cell-associated gene induced during mucociliary differentiation
  JOURNAL   Am J Respir Cell Mol Biol 31 (5), 491-500 (2004)
   PUBMED   15242845
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Apr 6, 2023 this sequence version replaced XM_008763648.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.27234.1,
                                           SRR26360181.1975000.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760434 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-257               JAXUCZ010000005.1  61474518-61474774   c
            258-402             JAXUCZ010000005.1  61468837-61468981   c
            403-515             JAXUCZ010000005.1  61465560-61465672   c
            516-591             JAXUCZ010000005.1  61464606-61464681   c
            592-821             JAXUCZ010000005.1  61464183-61464412   c
            822-908             JAXUCZ010000005.1  61462633-61462719   c
            909-1068            JAXUCZ010000005.1  61462070-61462229   c
FEATURES             Location/Qualifiers
     source          1..1068
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q22"
     gene            1..1068
                     /gene="Spmip6"
                     /gene_synonym="RGD1561916"
                     /note="sperm microtubule inner protein 6"
                     /db_xref="GeneID:500441"
                     /db_xref="RGD:1561916"
     exon            1..257
                     /gene="Spmip6"
                     /gene_synonym="RGD1561916"
                     /inference="alignment:Splign:2.1.0"
     CDS             123..908
                     /gene="Spmip6"
                     /gene_synonym="RGD1561916"
                     /note="isoform 1 is encoded by transcript variant 1;
                     spermatid-specific manchette-related protein 1"
                     /codon_start=1
                     /product="sperm microtubule inner protein 6 isoform 1"
                     /protein_id="NP_001406440.1"
                     /db_xref="GeneID:500441"
                     /db_xref="RGD:1561916"
                     /translation="MFLFSRKTKTPISTYSDSYRAPTSIKEVYKDPPLWAWEANKFVT
                     PGLTQTMHRHVDPEALQKMAKCAAQDYTYKSSISGHPYLPEKYWLSPDEEDKCCTSYL
                     DNDRYNTWKTSPCSNYWNKYTTCLPRLYKDTGMESEVRGMPLEYPPKPERLNAYEREV
                     VVNMLNSLSRNRTLPQIVPRCGCVDPLPGRLPYRGYESPCSGRHYCLRGMDYCTTGEP
                     STERRLRPLCSQQPTEYVALRPPARNAVCCYNSPAIILPISQP"
     exon            258..402
                     /gene="Spmip6"
                     /gene_synonym="RGD1561916"
                     /inference="alignment:Splign:2.1.0"
     exon            403..515
                     /gene="Spmip6"
                     /gene_synonym="RGD1561916"
                     /inference="alignment:Splign:2.1.0"
     exon            516..591
                     /gene="Spmip6"
                     /gene_synonym="RGD1561916"
                     /inference="alignment:Splign:2.1.0"
     exon            592..821
                     /gene="Spmip6"
                     /gene_synonym="RGD1561916"
                     /inference="alignment:Splign:2.1.0"
     exon            822..908
                     /gene="Spmip6"
                     /gene_synonym="RGD1561916"
                     /inference="alignment:Splign:2.1.0"
     exon            909..1068
                     /gene="Spmip6"
                     /gene_synonym="RGD1561916"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acagcatcta ggggcacctt ccagactgga ggtgtgggct atttagggga aggggtagtc
       61 actgatgtcc agcaggagtc cttgaaaggc aaagcccact acagcatccc tgagacccta
      121 ccatgttcct cttctcccgg aagaccaaga cccctatcag cacctacagt gactcctaca
      181 gggctcccac ctccatcaag gaggtctata aggacccacc tctgtgggcc tgggaagcga
      241 acaagtttgt gaccccaggt ctgactcaga ctatgcaccg tcatgtggat cctgaggccc
      301 tgcagaaaat ggccaaatgt gctgcacagg actacaccta taagagttcc atttcaggcc
      361 acccttactt gcctgagaaa tactggcttt ctccagatga agaggacaaa tgctgtacaa
      421 gctacctgga caatgaccgg tacaacacat ggaagacaag tccttgcagc aactactgga
      481 acaagtacac cacctgcctt cctcgactgt acaaggacac aggtatggag tcagaagttc
      541 gaggaatgcc gttggaatat cctccgaaac ctgagcgcct caacgcctac gagcgcgagg
      601 tagtggtgaa catgctgaac tcgctgtccc ggaaccggac tctgccacag attgtacccc
      661 gctgcgggtg tgtggaccct ctgccgggac gactgccgta ccgaggatac gaaagccctt
      721 gctctggacg ccactactgt ctgcgcggga tggactactg caccactggg gagcctagca
      781 cagaacgccg cctgcggcct ttgtgctcgc agcagccgac tgagtatgtt gcccttagac
      841 caccggccag gaatgcagtg tgttgttaca actcccccgc catcatacta cccatttccc
      901 aaccttagat gggacacaag tcacttcaag aagaccggtg gtccccagag aaacaactat
      961 gttgtccatc ctgaatttgt gtctgagact tttcctgtct acccttccta gtaaaacttt
     1021 gaccaggcca agggaggaag tggctcaata aactcttcac cacaaaga
//
