LOCUS       XM_039101458            1431 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus sperm microtubule inner protein 5
            (Spmip5), mRNA.
ACCESSION   XM_039101458
VERSION     XM_039101458.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-558               JACYVU010000055.1  355300-355857       c
            559-619             JACYVU010000055.1  353221-353281       c
            620-838             JACYVU010000055.1  350543-350761       c
            839-1025            JACYVU010000055.1  349212-349398       c
            1026-1123           JACYVU010000055.1  347931-348028       c
            1124-1197           JACYVU010000055.1  347772-347845       c
            1198-1198           "N"                1-1
            1199-1431           JACYVU010000055.1  347539-347771       c
FEATURES             Location/Qualifiers
     source          1..1431
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1431
                     /gene="Spmip5"
                     /note="sperm microtubule inner protein 5; The sequence of
                     the model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     inserted 1 base in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:681006"
                     /db_xref="RGD:1584737"
     CDS             415..1242
                     /gene="Spmip5"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: uncharacterized protein
                     C10orf82 homolog"
                     /protein_id="XP_038957386.1"
                     /db_xref="GeneID:681006"
                     /db_xref="RGD:1584737"
                     /translation="MYGAWPATNIPVRTQLQPRPGRVSSQRSGRACGKAELPGFLAVL
                     RLAHRKMEPPKTFMRKLPITPGYCGFIPWLSCQESPVEDRMNSCVKAFQERTQRYKEE
                     QQTLNCSVANTRPLKPICSEDTVLWVLHEYAKKYHPLTLECKNQKKPLREPPIPGWAG
                     YLPRAKVTEFGCATRYTLMARKCYEDFLGLVEQAKRAQLKPYEKTYSVSSAQPLHPSP
                     KVLQLQGLPPPYPEHFVPGQTLPSENFQALRPCGCAHWSNLSCXGEPTSWAKKFAQS"
ORIGIN      
        1 gctgggagac tgagcaaagt gcctgtttgg aagccaaatg gacaccgatg gccttccttt
       61 cccaggctac ttcctgcccc ttgctggacc tcagatagcg gggacgtggg ggaggggtgc
      121 gtagagacca ctgtacactt ttgaggggaa acagggtgcg ggtggtgagg atgtggattt
      181 cctgcaagga tcccctctgt gtctacattg gccgtcccgc cttcccttgt aggaatgagg
      241 tcttcaagct acaggcaaca acttccagaa caaacatcga tgaggcaaac ctctggactt
      301 cgcagtgcag ggcagaactg gctgctgctg agagattagc ggccaagttt actgggttta
      361 ccaagtgcct atagtttttg ttcggtgtca tcccagccct gacccctggt cttcatgtat
      421 ggggcgtggc cagctacaaa tatcccggta agaacccagc ttcagccccg cccaggcagg
      481 gtgagctcac aaaggtctgg aagagcctgt gggaaggcgg agctgcctgg tttcctggcg
      541 gtgctcaggc ttgcccaccg taaaatggag cctcccaaga ccttcatgag aaagctaccc
      601 atcacaccag gatactgtgg cttcatacca tggcttagtt gccaggagag ccccgtcgag
      661 gaccgcatga attcctgtgt gaaagccttc caggagagaa cgcagaggta caaggaggag
      721 cagcagaccc taaactgctc tgtggccaac acccggcccc tgaagcccat ctgttctgag
      781 gacacggtcc tgtgggtgct gcacgagtat gccaagaagt accaccccct gactctggaa
      841 tgcaaaaacc agaagaaacc actaagggag ccccctatcc ctggctgggc aggctacctg
      901 cccagagcca aggtcactga atttggctgt gccacaaggt ataccctcat ggccagaaag
      961 tgctacgagg acttcctggg tttggtggag caggccaaga gggctcaact gaagccttat
     1021 gagaaaacat acagtgtgag ctccgcacag cctcttcacc cttctcctaa agtcttacag
     1081 ctgcaaggcc tcccaccccc atacccagaa cattttgtgc caggtcaaac actcccaagc
     1141 gagaacttcc aagctctcag gccctgtggc tgtgctcatt ggtccaatct gtcatgcnag
     1201 ggtgagccaa catcctgggc aaagaaattt gcccagagct agagtcctgc attcttccca
     1261 ggagatgtga gcctcaaggg aggggagata cctgctgtgc ttgcatagaa accagcccct
     1321 tttgggcaat gaggagattt aataagaatc ccttaactgc tgccccagta attaccactg
     1381 tcgcctaaga cagtcagaga attcagaggc tacatctcag catactaagc c
//
