LOCUS       NM_001024329            2001 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus sperm microtubule inner protein 4 (Spmip4), mRNA.
ACCESSION   NM_001024329 XM_575476
VERSION     NM_001024329.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2001)
  AUTHORS   Firat-Karalar,E.N., Sante,J., Elliott,S. and Stearns,T.
  TITLE     Proteomic analysis of mammalian sperm cells identifies new
            components of the centrosome
  JOURNAL   J Cell Sci 127 (Pt 19), 4128-4133 (2014)
   PUBMED   25074808
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Apr 4, 2023 this sequence version replaced NM_001024329.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC078992.1, SRR26643293.22901.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-151               JAXUCZ010000004.1  81018912-81019062   c
            152-307             JAXUCZ010000004.1  81018262-81018417   c
            308-484             JAXUCZ010000004.1  81014071-81014247   c
            485-556             JAXUCZ010000004.1  81010400-81010471   c
            557-586             JAXUCZ010000004.1  81008501-81008530   c
            587-768             JAXUCZ010000004.1  81005672-81005853   c
            769-857             JAXUCZ010000004.1  81005273-81005361   c
            858-1032            JAXUCZ010000004.1  80998288-80998462   c
            1033-1124           JAXUCZ010000004.1  80997918-80998009   c
            1125-2001           JAXUCZ010000004.1  80994146-80995022   c
FEATURES             Location/Qualifiers
     source          1..2001
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q24"
     gene            1..2001
                     /gene="Spmip4"
                     /note="sperm microtubule inner protein 4"
                     /db_xref="GeneID:500124"
                     /db_xref="RGD:1563788"
     exon            1..151
                     /gene="Spmip4"
                     /inference="alignment:Splign:2.1.0"
     exon            152..307
                     /gene="Spmip4"
                     /inference="alignment:Splign:2.1.0"
     CDS             174..1940
                     /gene="Spmip4"
                     /note="uncharacterized protein C7orf31 homolog; sperm
                     associated microtubule inner protein 4"
                     /codon_start=1
                     /product="sperm-associated microtubule inner protein 4"
                     /protein_id="NP_001019500.1"
                     /db_xref="GeneID:500124"
                     /db_xref="RGD:1563788"
                     /translation="MEVIHGRPYCCRELEGADILSNTFYSNGLHTPYETTIRPTASED
                     RYQELRQALPQCRLRWGADREYGGMLPVSLPEEHRPKCEPPRLMSKGHQHYGFGGEIW
                     PKKLPIEQYYYLTQNKKSDLYGNDSLLPKPPNSTVGEICSSYPIEHPYHTHISRGAMF
                     PAFTSPKDLYTGVKARTQQPFPPTLPTKTYDSTILKTRGNPYRYELLDLPTDSKKKAL
                     TWPGQSVYYDFPKCVEKNKPVFYPKPPKTFAPNSSVTPWDTMTSAKDANIQRNLERSH
                     WLTSYTHDFTGLGPMSPLELDDYREKELAELTGQIGFDPQPQEKFHPSLKPPRPLDGR
                     IARLIQNQRPLEATVQIPPSCPDCTPRVLCAFHTFIPSSAEMMAMNDHLLSGLTHKNQ
                     NIEDKIKEEQRLLSTYALPSSYESKDMGSLFDLHSLPKITDTKKSDDLYWRQLDVKPL
                     PIARSKSNHYIDYEPHKSTYRDPYAMCLNPVRLSKSNILQNKTDMADLTFDNYLRKPE
                     FLGTDIESSDETRPLLNWISRAGVPKHHTNFRDFKNSFSRSMAHKRLHNSIQEEQKDL
                     RDKLQCGMRHQFYGHNSHYFYN"
     exon            308..484
                     /gene="Spmip4"
                     /inference="alignment:Splign:2.1.0"
     exon            485..556
                     /gene="Spmip4"
                     /inference="alignment:Splign:2.1.0"
     exon            557..586
                     /gene="Spmip4"
                     /inference="alignment:Splign:2.1.0"
     exon            587..768
                     /gene="Spmip4"
                     /inference="alignment:Splign:2.1.0"
     exon            769..857
                     /gene="Spmip4"
                     /inference="alignment:Splign:2.1.0"
     exon            858..1032
                     /gene="Spmip4"
                     /inference="alignment:Splign:2.1.0"
     exon            1033..1124
                     /gene="Spmip4"
                     /inference="alignment:Splign:2.1.0"
     exon            1125..2001
                     /gene="Spmip4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggccttcctg ccccgcacct gcccgcacgc tcccggggcc cgcaggtgcg gaagaccacg
       61 aaattccacg ccccgcggag agaagaacca ccagctccct agacaagaaa gggaggcgcg
      121 gtcaggcagc gctcccggac agatgtggca gattgccttt ttaggcgaga aagatggagg
      181 ttattcacgg cagaccctac tgttgcaggg agcttgaagg agctgacatt ctgtcaaaca
      241 ccttttactc taatggactg cacacccctt atgaaacaac tattcgacca accgcttcag
      301 aagacaggta tcaggagttg aggcaggcac tgccacaatg caggcttcgg tggggtgccg
      361 accgggaata tggtggcatg cttcctgttt cccttcccga agaacacagg ccaaaatgtg
      421 agcctcctcg cctcatgagc aaaggacatc agcattatgg atttggtgga gagatctggc
      481 ccaaaaagct ccctattgaa cagtattact atttgacaca gaataagaag agtgacctgt
      541 atggaaacga ctctttgtta cccaaaccac ctaattcaac agtaggagaa atctgctcat
      601 catatccaat tgaacatccc tatcatacgc acataagccg tggcgccatg tttccggcct
      661 ttacatcacc taaggacctc tacaccggtg ttaaagctcg cacccagcag ccttttcctc
      721 ctacattgcc aaccaagacc tatgattcaa caattctcaa gacaagaggg aacccttaca
      781 gatatgaact acttgatctt cccacggatt caaagaaaaa ggcattgact tggccaggtc
      841 agagtgtata ttatgatttt cctaaatgtg ttgagaaaaa caagccagta ttctacccca
      901 agcctcctaa aacctttgct cctaactcat ctgtgactcc gtgggatact atgacctctg
      961 caaaggatgc caatatacag agaaatcttg agcgttctca ctggctcact tcatacactc
     1021 atgattttac aggtctaggt cctatgagcc cccttgagct ggatgattac cgtgagaagg
     1081 agctagcaga actaactgga cagataggat ttgacccaca gcctcaagaa aaattccatc
     1141 cttccttaaa acctcctaga cctttggatg gtagaattgc ccgacttatt cagaaccaac
     1201 gacctctgga ggctacggtg caaataccac cttcctgtcc agactgtacc ccaagagttt
     1261 tgtgtgcttt tcatacattc atacccagtt ctgcagaaat gatggcaatg aatgatcacc
     1321 tcctgtctgg actaacccat aaaaaccaga atattgaaga caagattaag gaagaacaac
     1381 gcttgttgtc tacctatgca ctcccatcga gttatgaatc aaaagacatg ggtagtcttt
     1441 ttgacctaca ctcccttcca aagatcacag acaccaaaaa gtcagatgat ttgtactgga
     1501 ggcagctgga cgtgaagccc ctacccatag cccgctctaa gtcaaaccat tacattgatt
     1561 atgaaccaca taagtccacc taccgtgacc catatgctat gtgtctaaac cctgttcgcc
     1621 tcagtaagtc taatattcta caaaacaaaa cagatatggc tgatctcact tttgacaact
     1681 atttaagaaa accagagttt ttgggcacag acatagaaag cagtgatgaa acaagacctc
     1741 tcttgaattg gatttctcga gctggcgtgc ccaagcatca taccaacttt cgagatttta
     1801 agaactcatt ttcaaggtcc atggcacata aacgtttgca taactccatt caagaagaac
     1861 aaaaagacct cagagataaa ttgcagtgtg ggatgagaca tcagttttat ggccacaata
     1921 gccattattt ctataattga gatattccct tgaaacccag cctcttgcaa gaaaataaaa
     1981 tatgtcatag agtgccctgc a
//
