LOCUS       NM_001401975            1817 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus sperm microtubule inner protein 2 (Spmip2),
            transcript variant 2, mRNA.
ACCESSION   NM_001401975 XM_006232520
VERSION     NM_001401975.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1817)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Mar 3, 2022 this sequence version replaced XM_006232520.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC085354.1, SRR26360181.1970559.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-170               JAXUCZ010000002.1  166788437-166788606
            171-403             JAXUCZ010000002.1  166843080-166843312
            404-462             JAXUCZ010000002.1  166858359-166858417
            463-1817            JAXUCZ010000002.1  166868332-166869686
FEATURES             Location/Qualifiers
     source          1..1817
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q33"
     gene            1..1817
                     /gene="Spmip2"
                     /note="sperm microtubule inner protein 2"
                     /db_xref="GeneID:499643"
                     /db_xref="RGD:1566255"
     exon            1..170
                     /gene="Spmip2"
                     /inference="alignment:Splign:2.1.0"
     CDS             110..1567
                     /gene="Spmip2"
                     /note="isoform 2 is encoded by transcript variant 2;
                     uncharacterized protein C4orf45 homolog; sperm associated
                     microtubule inner protein 2"
                     /codon_start=1
                     /product="protein SPMIP2 isoform 2"
                     /protein_id="NP_001388904.1"
                     /db_xref="GeneID:499643"
                     /db_xref="RGD:1566255"
                     /translation="MALSHREPLSETVGKRMVITGPDYIKDHLPKVHQHIAYIGEKRP
                     ALEKTGDLRYLWRSASNRSLPAKYKHEYTGGIGWGIPQYSFFNRSRVESGFHIQHGEL
                     SLRAMDRLTHRYQNPCEMEHGPWGSSWFLVTNATPSGRKIDSDKDLGLQPGLRVQNRP
                     LISLLPPAAAQPEDVNISSGGSADHGQGLQLLTCPPDINTDSGGSRTTDPDIVHSSST
                     GHDYVSSGDSTDYSDWYNPQRQSRPFSSVWLPTAARPRDIGMISGHPRGLQLLTCADI
                     NTDSDYGRNTDPDVALSSSLIPDINMASRGYRGYSDWYGPQRQHRTFTSIWPPAARPK
                     DINMAPGYNIDHGHVHGLQLLTGSTDINTDSGGSRTTDLDVAPSSSMVPEINMVSGGR
                     GYSDWYGPQKQRSPQTWLQVAPQAADICMTPGSNTYLTTDINKDPRCSTMQYHADGTM
                     NSSMASDGSPNHSHTAQGYQPGFRLKHRLRRSAWS"
     exon            171..403
                     /gene="Spmip2"
                     /inference="alignment:Splign:2.1.0"
     exon            404..462
                     /gene="Spmip2"
                     /inference="alignment:Splign:2.1.0"
     exon            463..1817
                     /gene="Spmip2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agttcacaga cagggagagc agagacacgg tccttgccac ttactggtgc actcactgtt
       61 ctgaggacat tcaggcagta attgcagcaa agaagttgaa acttcggcca tggctttgtc
      121 acaccgggag ccactctctg agacggtggg aaagcgcatg gtcatcacag gtccagacta
      181 cataaaagac cacttgccta aagttcacca gcatatcgcc tatataggag aaaagcgtcc
      241 agcattagag aaaactggag atctcagata tttatggagg tctgcttcca acagaagcct
      301 gccggcaaag tataaacacg agtacactgg tggaattggt tgggggatac cacagtacag
      361 tttcttcaac agatcaagag tggaaagtgg ctttcatatc cagcacggcg aactaagtct
      421 tcgagcgatg gacagattaa cccaccgcta tcaaaaccct tgtgagatgg agcatggacc
      481 atggggttcc tcatggtttc tggtgacgaa cgcaaccccc agcggcagga agatcgactc
      541 agacaaggac ctcggacttc aaccaggcct cagggtgcag aacaggccac tcatatcatt
      601 attaccccca gctgcagcac aacccgagga tgtcaacata tcttcaggtg gcagcgcaga
      661 tcatggacaa ggcctgcagt tgttaacatg ccccccagac atcaacacag actctggggg
      721 tagtagaacc acagacccag acatagtcca cagtagcagc acaggccatg attatgtgtc
      781 ttcaggggac agcacagact actcagattg gtacaacccc cagaggcagt ctaggccatt
      841 ctcatcagta tggctcccaa ctgcagcacg acccagggac atcggcatga tttcaggaca
      901 cccacgtggc cttcagttgt taacatgcgc agacatcaac acagactctg actatggtag
      961 gaacacagac ccagacgtgg cccttagtag cagcctaatc ccagatataa acatggcatc
     1021 acgtggctac agaggctact cagattggta cggtccccag aggcagcaca ggacattcac
     1081 atcaatatgg cccccagctg cacgacccaa agacatcaac atggctccag gttacaacat
     1141 agatcatgga catgtgcatg gcctgcagtt gttaacaggc tccacagaca tcaacacaga
     1201 ctctgggggt agtaggacca cagacctaga tgtggccccc agtagcagca tggtcccaga
     1261 aatcaacatg gtttcaggtg gcagaggcta ctcagattgg tatggccccc agaagcagcg
     1321 cagcccacag acatggcttc aggtggcacc acaggcagca gacatctgca tgacaccagg
     1381 tagtaacaca tacctaacca cagacatcaa caaagacccc agatgcagta ctatgcagta
     1441 ccatgcagat gggaccatga atagctccat ggcttcagat ggcagcccaa accactcaca
     1501 tacagcccag ggatatcaac ccggcttcag gctgaagcat agattgagga gatctgcatg
     1561 gagttaggta gtacaaaggc cacagacatc agcccagtcc ctggctgcat caggaccact
     1621 gacgcacaca tggccctcgg tgacatcaag gaccagttct gcctcttccc acagtgcatg
     1681 ctctgctcca ctcttccgcc cttcccccat ccgcactgct cgcttatctg ttcatcatcg
     1741 tggcacccgc tagcccagtc cagtttccac gagcttaggc cccgttcttt tctaatacaa
     1801 agattattac tttttaa
//
