LOCUS       NM_001400953            1268 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus Spi-C transcription factor (Spic), transcript
            variant 1, mRNA.
ACCESSION   NM_001400953 XM_006241223
VERSION     NM_001400953.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1268)
  AUTHORS   Kageyama,S., Liu,H., Nagata,M. and Aoki,F.
  TITLE     The role of ETS transcription factors in transcription and
            development of mouse preimplantation embryos
  JOURNAL   Biochem Biophys Res Commun 344 (2), 675-679 (2006)
   PUBMED   16630543
REFERENCE   2  (bases 1 to 1268)
  AUTHORS   Carlsson,R., Persson,C. and Leanderson,T.
  TITLE     SPI-C, a PU-box binding ETS protein expressed temporarily during
            B-cell development and in macrophages, contains an acidic
            transactivation domain located to the N-terminus
  JOURNAL   Mol Immunol 39 (16), 1035-1043 (2003)
   PUBMED   12749910
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Jan 31, 2022 this sequence version replaced XM_006241223.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FM096026.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676785 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-50                JAXUCZ010000007.1  24964851-24964900   c
            51-147              JAXUCZ010000007.1  24962335-24962431   c
            148-265             JAXUCZ010000007.1  24961615-24961732   c
            266-381             JAXUCZ010000007.1  24960153-24960268   c
            382-490             JAXUCZ010000007.1  24959513-24959621   c
            491-1268            JAXUCZ010000007.1  24957213-24957990   c
FEATURES             Location/Qualifiers
     source          1..1268
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q13"
     gene            1..1268
                     /gene="Spic"
                     /note="Spi-C transcription factor"
                     /db_xref="GeneID:314711"
                     /db_xref="RGD:1306272"
     exon            1..50
                     /gene="Spic"
                     /inference="alignment:Splign:2.1.0"
     exon            51..147
                     /gene="Spic"
                     /inference="alignment:Splign:2.1.0"
     CDS             145..897
                     /gene="Spic"
                     /note="isoform 1 is encoded by transcript variant 1;
                     transcription factor Spi-C; Spi-C transcription factor
                     (Spi-1/PU.1 related)"
                     /codon_start=1
                     /product="transcription factor Spi-C isoform 1"
                     /protein_id="NP_001387882.1"
                     /db_xref="GeneID:314711"
                     /db_xref="RGD:1306272"
                     /translation="MTCVELFPQTFVQQDSLGQAFEDAFEVLTQHSTGEMQYPPEHRN
                     YMAIINPYPHIRGNSNYCGMLPPTEEPLYDWRGVTNGSADLYLEGSFHQSLQNVAETQ
                     LVQAPFFQEKGGRGRRKLRLFEYLFESLCNSEMVSCIQWVDKAKGIFQFISKNKEKLA
                     ELWGKRKGNRKPMTYQKMARALRNYARTGEITKIRRKLTYQFSEAVLQRLAPSHFLGK
                     DLFYSQYKQPDQGYLNLNHWNANYYAHASYQS"
     exon            148..265
                     /gene="Spic"
                     /inference="alignment:Splign:2.1.0"
     exon            266..381
                     /gene="Spic"
                     /inference="alignment:Splign:2.1.0"
     exon            382..490
                     /gene="Spic"
                     /inference="alignment:Splign:2.1.0"
     exon            491..1268
                     /gene="Spic"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gatagtgaga gtccttaaca tcgtactgat atcgcaacat tgtcttcctg aacttgttat
       61 tgaacccaga gccttgcaca agccagtacg cacgtgctta ctagccgctg tttcctcaac
      121 ccaagactct tcaattcatg aataatgact tgcgttgaac tgtttccaca gactttcgtc
      181 cagcaagaca gcctgggcca agcatttgaa gacgccttcg aagtactgac acaacattcc
      241 actggagaaa tgcagtaccc cccagaacat agaaattaca tggctatcat taacccttat
      301 cctcacatca gaggcaattc taactactgt ggaatgttac cacccacaga ggaacccctc
      361 tatgactgga gaggtgtaac aaatggttct gcggacctgt atttggaagg aagcttccat
      421 caatccctac agaacgtagc tgaaacccag ctggtacaag cccctttctt ccaggaaaag
      481 ggaggaagag gcaggaggaa gcttcggcta tttgaatacc ttttcgaatc cctgtgcaat
      541 tcggagatgg tgtcttgtat ccagtgggtc gacaaagcca aaggcatctt tcagtttata
      601 tcaaaaaaca aagaaaaact cgctgaactc tgggggaaaa gaaaaggcaa ccggaaaccc
      661 atgacttacc agaagatggc cagagccctg aggaattatg ccagaactgg ggagatcaca
      721 aaaatccgga gaaagctgac ctaccagttc agtgaagctg ttctccaaag acttgctccg
      781 tctcacttcc tggggaaaga cctcttctac tcacagtata agcagcctga tcagggctat
      841 ctcaatttaa accattggaa tgcaaattac tacgctcacg ccagttacca gagctgacat
      901 tagcttcttc ttgccttgcc agtgtcaaga gagcccatgc tttaggattt ccaaagcaaa
      961 ttgcttctcg gttttgggat tccacaccag caagacaaaa acgcagaaag agaatatata
     1021 aacaggccat gtttggactt cgcttgtcct gacaactttt aagggccgac atactggtgt
     1081 tgaagggaat gtagatgttt cagaagcatg cttcctgaag atcaccattt ctagtcaacg
     1141 ggctcagtgt ccgtgaattg ggtatccaag aacatcctga agccagaatg tcttctcaga
     1201 aaaatgggga cacacagtgg cacttggtat ttttaaataa acgattgaat ttgaagcaac
     1261 tgaaaaaa
//
