LOCUS       XM_039087404            3271 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus Spi-B transcription factor (Spib),
            transcript variant X15, mRNA.
ACCESSION   XM_039087404
VERSION     XM_039087404.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086019) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3271
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..3271
                     /gene="Spib"
                     /note="Spi-B transcription factor; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     mRNAs, 2 ESTs, 20 long SRA reads"
                     /db_xref="GeneID:499146"
                     /db_xref="RGD:1565899"
     CDS             664..1401
                     /gene="Spib"
                     /codon_start=1
                     /product="transcription factor Spi-B isoform X15"
                     /protein_id="XP_038943332.1"
                     /db_xref="GeneID:499146"
                     /db_xref="RGD:1565899"
                     /translation="MPLCLSPARLDGPHLSCLVGEGVSPRPEMTLSSLQQYPEGVFYD
                     LDSCKSFSYPDSDGGPDSTWGWTEAPPAPAIAAYEAFDPAATAAFAHTQAVQLCYGHG
                     PSPSTYSPVGTLDPAPSLEASGPGLQVYPSEDFTSQTLGSLAYAPYPSPVLSEEEDIL
                     LDSPALEVSDSESDEALLAGSEGRGSEVHARSCACTSSCWSYSCAGTCASACGGWSQV
                     LASSSSPPSTRSCWLAAGASRRATANA"
     polyA_site      3271
                     /gene="Spib"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 aggcaggtga tcagggggtg actctccatc agaagacagt tctccatcag ctctgtcttg
       61 ctagagaggg ttccagaaat ggcatgttct ggagacactc ccgtcctgcc taggtcctcc
      121 caggtgtgcc acctgtcatc ttgcatggtt catttctggc actctgcacc ttgggttttg
      181 tctgtctcta gtctcttcag tccagccatt tcctttggtt cctggttgtg ccctggctgc
      241 ccatcctggg gcacaaggaa cgtgctgctt tgctcacccc tctcccccca tttctgtgta
      301 cctttctagt ccagttcttc agatcactgc tgctcctagt cttagctgga cttaagacac
      361 tcaaacccag ttctctggcc accctgtccc cagctgtctg gggactttct cccctacttt
      421 ccctgcctcc cccagtgtct gtgcatgcaa atccccggga gagtggggga catttgcctg
      481 gcacccgccc cctacttcct gtcccgatag gggtgtgggg gtgtttgggg gggaaggctg
      541 ggcgcacaca gggacagccg acccaacaga ctgcagagct gtggtggtga tcacagctgc
      601 caccacctcc cctctgggcc ccacaaccac tgtgagactc aggtggctga gagtggctct
      661 aacatgcccc tgtgtctctc tcctgccagg ctggatggcc cacacttaag ctgtttggtt
      721 ggggagggag tatctccaag gcctgagatg accctgtcct cactccagca gtacccagaa
      781 ggtgtcttct atgacctgga cagctgcaag tccttcagtt acccagattc agatgggggc
      841 cctgactcca catggggctg gacagaggcc ccgcctgccc ctgccatcgc tgcctatgaa
      901 gctttcgacc ctgctgctac ggcagccttt gcccacaccc aggctgtgca gctctgttat
      961 ggtcatggtc ctagcccctc cacctacagt cccgtgggaa cccttgaccc agcccccagc
     1021 ttggaggctt cggggcctgg cctccaggta tacccctcag aggacttcac cagccagacc
     1081 ctgggctcct tggcttatgc tccgtacccc agccctgtgc tatcagagga ggaagacatt
     1141 ctgctggaca gccctgccct ggaggtctcg gacagtgagt cagacgaggc cctcttggct
     1201 ggctccgagg ggaggggatc tgaggtgcac gcaagaagct gcgcctgtac cagttcttgc
     1261 tggagttact cctgcgcggg gacatgcgcg agtgcgtgtg gtgggtggag ccaggtgctg
     1321 gcgtcttcca gttctcctcc aagcacaagg agttgttggc tcgccgctgg ggccagcaga
     1381 agggcaaccg caaacgcatg acgtatcaga agctggcccg agcgctgcgc aactatgcca
     1441 agacaggcga aatccgcaag gtcaaacgca agctcaccta ccagtttgac agcgcgctgc
     1501 tgccagccgc ccggcgtgcc tgagcgcccc gctgggaccc ctttctgatc cctaagtccc
     1561 agtgcccata gaaccccata ttggggatca gcaggctgcc agggtcctca gctctcacca
     1621 gggcctcccc agagtctcct gtgccatgta tgggattcca acccaggatg gtcctgtttg
     1681 agggctcact ggccattcta cgctgttcca aaatggcaag tttttctttg ggggcccttg
     1741 gtgttgtctg cggttccaga atccgcagat acttcttgtg agccctgtaa gctcacacgc
     1801 tatcgcacca gcaggtggcg ctgtctacag cccccaaacc cctgtatctg ttggccggat
     1861 gggtccctct gttctcccct gaggcccttg tcagatctga gatctagtta tgtttggagc
     1921 tccctgagaa cactgtgcca cctgtgtgtg acttttctct gtatccattt atgactttta
     1981 tttgtttgag acagggtctc actatgtagt tcaggctggc ccccaacctg tgacaatcct
     2041 cctgcctcag cctcctgaat cctggggatt acaaaggtgc accatcagac caggcatttt
     2101 ccatttttga gagaagattt tactatgtaa cccaggctgt cctcgagctt gcctcagcca
     2161 tccctcgggt ccctctggga tctatgtccc agatgaattg ttgggtaggg tagggatggt
     2221 gtgttcggtg aatcttatag gttggaccct cccttctggg gtcttttgat tatatgggaa
     2281 gttctctagg ctcttagcag ccctgcattc acacactgat ggtcccgttt gaagtgtgat
     2341 ctgtgtatgg tgtttgaggg tcatactggc acttggccag tttgggatgt ggggcagagg
     2401 tatggctgtg acaaggcttc ggtttttgag attgggtctc atgtatctca gtctggcctt
     2461 gaactcccta tatagctgag gatgaccttg aacccttgcc tcagccagaa tgctcagatt
     2521 ccaggcagca ctatattact atttcccttt tcttacgtca aggtctgtct atgtagccca
     2581 ggctagcttt aatctcataa cactcttcct gcctctgtga ctggaaagct agggctacgg
     2641 acatgtttta ccacactggt ttagccaagc atacccctgt tttatcaccc ttgccatggc
     2701 taaacagact tctagagctg gtcacccccc acccacaagg caggcaaatt aagtccctgc
     2761 aggtgttttc ttcagaggaa agcccccttt tacagtcatc tttcaaacta gagagcattc
     2821 ccacaatcca gatatctgaa tgtgaatttt tggacaactg gtaacctctg gccagctttt
     2881 ctggagccag cctttgtcca gatgttggct caggaccctg ctcagtgcct gcctgtctca
     2941 caccagtgac ttctcacaac tgcccgtccg ggcccagtgt tttacctgct gcaggtcaag
     3001 cagactcaaa ctgtgggctt ctcttgggcc tccatggcag aatcagaact cagagttttg
     3061 aagcctgagt gagctgggcc accatgaaga ggcccttaaa actctgccac ccagatgggc
     3121 agcacctcag tgggtggcca gggggcagga aaggatcatg gaagatccag atgttcatgt
     3181 ggttaaggtt aaactggtac caaataaaat tatttcttaa aacccaacat catcaatcta
     3241 catgcataat aaagccctac atcaaaattc a
//
