LOCUS       XM_006229112            2630 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus Spi-B transcription factor (Spib),
            transcript variant X2, mRNA.
ACCESSION   XM_006229112
VERSION     XM_006229112.4
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086019) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006229112.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2630
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..2630
                     /gene="Spib"
                     /note="Spi-B transcription factor; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     mRNAs, 2 ESTs, 23 long SRA reads, 1 Protein"
                     /db_xref="GeneID:499146"
                     /db_xref="RGD:1565899"
     CDS             22..882
                     /gene="Spib"
                     /codon_start=1
                     /product="transcription factor Spi-B isoform X2"
                     /protein_id="XP_006229174.1"
                     /db_xref="GeneID:499146"
                     /db_xref="RGD:1565899"
                     /translation="MLALEAAQLDGPHLSCLVGEGVSPRPEMTLSSLQQYPEGVFYDL
                     DSCKSFSYPDSDGGPDSTWGWTEAPPAPAIAAYEAFDPAATAAFAHTQAVQLCYGHGP
                     SPSTYSPVGTLDPAPSLEASGPGLQVYPSEDFTSQTLGSLAYAPYPSPVLSEEEDILL
                     DSPALEVSDSESDEALLAGSEGRGSEAGARKKLRLYQFLLELLLRGDMRECVWWVEPG
                     AGVFQFSSKHKELLARRWGQQKGNRKRMTYQKLARALRNYAKTGEIRKVKRKLTYQFD
                     SALLPAARRA"
     polyA_site      2630
                     /gene="Spib"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 cctagcctgc tctgaaccac catgcttgct ctggaggctg cacagctgga tggcccacac
       61 ttaagctgtt tggttgggga gggagtatct ccaaggcctg agatgaccct gtcctcactc
      121 cagcagtacc cagaaggtgt cttctatgac ctggacagct gcaagtcctt cagttaccca
      181 gattcagatg ggggccctga ctccacatgg ggctggacag aggccccgcc tgcccctgcc
      241 atcgctgcct atgaagcttt cgaccctgct gctacggcag cctttgccca cacccaggct
      301 gtgcagctct gttatggtca tggtcctagc ccctccacct acagtcccgt gggaaccctt
      361 gacccagccc ccagcttgga ggcttcgggg cctggcctcc aggtataccc ctcagaggac
      421 ttcaccagcc agaccctggg ctccttggct tatgctccgt accccagccc tgtgctatca
      481 gaggaggaag acattctgct ggacagccct gccctggagg tctcggacag tgagtcagac
      541 gaggccctct tggctggctc cgaggggagg ggatctgagg caggtgcacg caagaagctg
      601 cgcctgtacc agttcttgct ggagttactc ctgcgcgggg acatgcgcga gtgcgtgtgg
      661 tgggtggagc caggtgctgg cgtcttccag ttctcctcca agcacaagga gttgttggct
      721 cgccgctggg gccagcagaa gggcaaccgc aaacgcatga cgtatcagaa gctggcccga
      781 gcgctgcgca actatgccaa gacaggcgaa atccgcaagg tcaaacgcaa gctcacctac
      841 cagtttgaca gcgcgctgct gccagccgcc cggcgtgcct gagcgccccg ctgggacccc
      901 tttctgatcc ctaagtccca gtgcccatag aaccccatat tggggatcag caggctgcca
      961 gggtcctcag ctctcaccag ggcctcccca gagtctcctg tgccatgtat gggattccaa
     1021 cccaggatgg tcctgtttga gggctcactg gccattctac gctgttccaa aatggcaagt
     1081 ttttctttgg gggcccttgg tgttgtctgc ggttccagaa tccgcagata cttcttgtga
     1141 gccctgtaag ctcacacgct atcgcaccag caggtggcgc tgtctacagc ccccaaaccc
     1201 ctgtatctgt tggccggatg ggtccctctg ttctcccctg aggcccttgt cagatctgag
     1261 atctagttat gtttggagct ccctgagaac actgtgccac ctgtgtgtga cttttctctg
     1321 tatccattta tgacttttat ttgtttgaga cagggtctca ctatgtagtt caggctggcc
     1381 cccaacctgt gacaatcctc ctgcctcagc ctcctgaatc ctggggatta caaaggtgca
     1441 ccatcagacc aggcattttc catttttgag agaagatttt actatgtaac ccaggctgtc
     1501 ctcgagcttg cctcagccat ccctcgggtc cctctgggat ctatgtccca gatgaattgt
     1561 tgggtagggt agggatggtg tgttcggtga atcttatagg ttggaccctc ccttctgggg
     1621 tcttttgatt atatgggaag ttctctaggc tcttagcagc cctgcattca cacactgatg
     1681 gtcccgtttg aagtgtgatc tgtgtatggt gtttgagggt catactggca cttggccagt
     1741 ttgggatgtg gggcagaggt atggctgtga caaggcttcg gtttttgaga ttgggtctca
     1801 tgtatctcag tctggccttg aactccctat atagctgagg atgaccttga acccttgcct
     1861 cagccagaat gctcagattc caggcagcac tatattacta tttccctttt cttacgtcaa
     1921 ggtctgtcta tgtagcccag gctagcttta atctcataac actcttcctg cctctgtgac
     1981 tggaaagcta gggctacgga catgttttac cacactggtt tagccaagca tacccctgtt
     2041 ttatcaccct tgccatggct aaacagactt ctagagctgg tcacccccca cccacaaggc
     2101 aggcaaatta agtccctgca ggtgttttct tcagaggaaa gccccctttt acagtcatct
     2161 ttcaaactag agagcattcc cacaatccag atatctgaat gtgaattttt ggacaactgg
     2221 taacctctgg ccagcttttc tggagccagc ctttgtccag atgttggctc aggaccctgc
     2281 tcagtgcctg cctgtctcac accagtgact tctcacaact gcccgtccgg gcccagtgtt
     2341 ttacctgctg caggtcaagc agactcaaac tgtgggcttc tcttgggcct ccatggcaga
     2401 atcagaactc agagttttga agcctgagtg agctgggcca ccatgaagag gcccttaaaa
     2461 ctctgccacc cagatgggca gcacctcagt gggtggccag ggggcaggaa aggatcatgg
     2521 aagatccaga tgttcatgtg gttaaggtta aactggtacc aaataaaatt atttcttaaa
     2581 acccaacatc atcaatctac atgcataata aagccctaca tcaaaattca
//
