LOCUS       XM_039105596            2496 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus Spi-1 proto-oncogene (Spi1),
            transcript variant X4, mRNA.
ACCESSION   XM_039105596
VERSION     XM_039105596.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2496
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2496
                     /gene="Spi1"
                     /gene_synonym="Pu.1; Sfpi1"
                     /note="Spi-1 proto-oncogene; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1 EST,
                     1 Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 84 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:366126"
                     /db_xref="RGD:1359607"
     CDS             236..790
                     /gene="Spi1"
                     /gene_synonym="Pu.1; Sfpi1"
                     /codon_start=1
                     /product="transcription factor PU.1 isoform X3"
                     /protein_id="XP_038961524.1"
                     /db_xref="GeneID:366126"
                     /db_xref="RGD:1359607"
                     /translation="MELEQMHVLDTPMAPPHASLSHQVSYMPRVCFPYPPLSPAHQQS
                     SDEEEGERQSPPLEVSDGEADGLEPGPGLLHGETGSKKKIRLYQFLLDLLRSGDMKDS
                     IWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYQKMARALRNYGKTGEVKKVKK
                     KLTYQFSGEVLGRGGLAERRLPPH"
ORIGIN      
        1 tggggaccag gaatgagagc catcggatga gctggttact tatgaatcag aactatacca
       61 acgtcaaaca catgactact attccttgat tggtggtgat ggagacagcc atagcgatca
      121 ctattgggat ttctccacac accatgtaca cagcgagttt gagagcttcc ctgagaacca
      181 cttcacggag ctgcagagcg tgcagccccc gcagctacag cagctctacc gccacatgga
      241 gctggagcag atgcacgtcc ttgacacccc catggcaccg ccccatgcca gcctcagtca
      301 ccaggtttcc tacatgcccc gggtgtgctt cccttatcca cccttgtccc cagcccacca
      361 gcagagctca gatgaggagg agggtgagag gcagagccct ccactggagg tgtctgatgg
      421 agaagctgat ggcttggagc ctgggccagg ccttctgcat ggggagacag gcagcaagaa
      481 gaagattcgt ttgtaccagt tcctgctgga cctgctgcgt agcggagaca tgaaggacag
      541 catctggtgg gtggacaagg acaaaggtac cttccagttc tcgtccaagc acaaggaggc
      601 gctggcgcac cgctggggca tccagaaggg aaaccgcaag aagatgacct accagaagat
      661 ggcgcgcgcg ctgcgcaact acggcaagac gggcgaggtg aagaaagtca agaagaagct
      721 cacttaccag ttcagcggcg aggtgctggg ccgtgggggc ctggctgagc ggcgcctccc
      781 gccccactga tcgcctgcag agcccgccag gctcccggcc cccgccggcc atagcattaa
      841 cctgtcgccc ggcccggaca cagggaggac attcccaggg ccgaggcagg actggggacc
      901 cggcctcgcc ccgccatgcc ccgcctggcc ggccccgccc gcttcgcctc ccaccaggac
      961 tctagccagg cccaagggct gcctgggcct cggacctcac ccgagggtca gcctggctta
     1021 gtggccacgg tgcttctttg ggagtctggc gttggcacct ttttgtatat tgaatgcttt
     1081 ttaaaaagct cttcatcttc ccaccccacc ccccatcccc attagcctca aaagtaaaat
     1141 tattgctggc tattctccca gccaagagtc tcattcaaga gtttgtgtgt gccgggtcgc
     1201 cccgagtgca cggatgtctc tcttacttat ccagtgaaca tgtttccaaa gctggaccct
     1261 agggacatgg ggaccgtgga cacacagcac ttatttctag taaaacaagt cctgggttgt
     1321 tatcagggat cggggatcat aatgaaaggc cctcagcacc aggaagggtt tacgtctcag
     1381 tgaagcttga actcataatc ttctgagtgc gacacacagt gatggtggtg atgaccacag
     1441 caataagcac aggtgttctg gtcacttagc atctgtcgac tttgagatga cgagcctaac
     1501 atctcccagc tttacagaat gggaaactga ggctcatagt agttaaataa ttgtttcaat
     1561 gtcgcaccgc tggatgctct ctaggactgt ccatcacatc aggcagggta gaagctccac
     1621 ttatctgaaa gaggaaatgc ttctgcagga gtgaagtcca atgctcctgg tgccacccag
     1681 catgattctg gatgatttga ttgtgagcct agcctttacc agctgcaatc tttctagcat
     1741 ggacgcaaag cattcttttt tttttttttt tttttttttt ttttttggtt cttttttttc
     1801 ggagctgggg accgaaccca gggccttgcg cttcctaggt aagcgctcta ccactgagct
     1861 aaatccccag ccccgacgca aagcattctt aatggagact ccataggcac ggccttccct
     1921 tcgaagcact ttgctcccag gaactgcagg caagggacat ctgtaaacat cttgtttcat
     1981 ttaggtgatg tagacagaat gtaggcaggt gatggcagtc agggagtgag ggcatttccc
     2041 aatgtctgca catctcagga aacacaaacc ctagggatgt cactgtcggg aaagatccct
     2101 gcacacctcc tggccacgct gatgttccct agtcagattg ccgagtctca agagaagcct
     2161 gtggatatga gctgctgata gctctgtggt agagccacag tctttttttt tcttaagtat
     2221 tttaattaca ttttaattca tttattttgt atgtatgtat gtgcacacat gtcatggcat
     2281 atatgtggag gtcagaagaa aacttgtagg agtcagttct ctccttccac caatggatcc
     2341 cccaggagtt gaactcaggt catcaggctt agcaacacac acctttagca acttgagccg
     2401 tttgtttgtt tgtttgtttg tttggttggt tggttagttt tttagtgact ctcaagcccc
     2461 agttctttaa acattaaaga aaaaatattt tgccca
//
