LOCUS       XM_039097806            3685 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SPG7 matrix AAA peptidase subunit,
            paraplegin (Spg7), transcript variant X2, mRNA.
ACCESSION   XM_039097806
VERSION     XM_039097806.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051354.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039097806.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3685
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3685
                     /gene="Spg7"
                     /note="SPG7 matrix AAA peptidase subunit, paraplegin;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 39 ESTs, 5 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 236 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:353231"
                     /db_xref="RGD:727940"
     CDS             21..2363
                     /gene="Spg7"
                     /codon_start=1
                     /product="paraplegin isoform X2"
                     /protein_id="XP_038953734.1"
                     /db_xref="GeneID:353231"
                     /db_xref="RGD:727940"
                     /translation="MAAALLLLRALRQSPEPGPWRLWAQLSGRSPGLFSGAGGRRPYV
                     VRGTPIGLAAAGGHTPQSLLLRILTPSFEGVSGLLLKRHIVPSAIRLWQLSGSTLYFN
                     TSGLKQKNKDDDKPKGKAPEDDEERRRKEREDQMYRERLRTLFIIAIVMSLLNSLSTS
                     GGSISWADFVNEMLAKGEVQRVQVVPESDVVEVYLHPGAVVFGRPRLALMYRMQVANI
                     DKFEEKLRAAEDELNIESKDRIPVSYKRTGFFGNALYALGMTAVGLAILWYVFRLAGM
                     TGREGGFSAFNQLKMARFTIVDGKTGKGVSFQDVAGMHEAKLEVREFVDYLKSPERFL
                     QLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGPEFVEVIGGLGAARVRSL
                     FKEARARAPCIVYIDEIDAVGKKRSTSMSGFSNTEEEQTLNQLLVEMDGMGTADHVIV
                     LASTNRADVLDNALMRPGRLDRHVFIDLPTLQERREIFEQHLKGLKLTQPSSFYSQRL
                     AELTPGFSGADIANICNEAALHAAREGHTSVHTFNFEYAVERVIAGTAKKSKILSKEE
                     QRVVAFHESGHALVGWLLEHTEAVMKVSIAPRTNAALGFSQMLPRDQYLFTKEQLFER
                     MCMALGGRAAEAISFSRVTSGAQDDLRKVTRIAYSMVKQFGMAPSIGPVSFPEAQEGL
                     VGIGRRPFSQGLQQMMDHEARLLVARAYRHTEKVLLDNLDKLQALANALLEKEVINYE
                     DIEALIGPPPHGPKKMIAPQKWIDAEKEKQASGEEEAPAP"
ORIGIN      
        1 caggcgccgc tctcggcacc atggcggccg cgttgctgct gcttcgcgcg ctccgccaga
       61 gcccggagcc cgggccctgg cggctgtggg cccagctctc aggcaggagc cccggcctct
      121 tctccggggc cggcggtagg cggccgtacg tagtccgtgg gactccgatt ggcctggctg
      181 cggctggagg ccacacgcct cagagcttgc tattgcgaat actgacccct agctttgaag
      241 gtgttagcgg attgttactg aaacggcata tagttccaag tgcaatcaga ctgtggcagc
      301 tttcaggtag tactttgtat tttaacacct cagggttgaa gcagaagaac aaagatgatg
      361 ataaacccaa aggcaaagcc ccggaagatg acgaagagag gaggcggaag gagcgggaag
      421 accagatgta ccgggagagg ctgcgcacct tgttcatcat cgccatcgtg atgagcctgc
      481 tcaactccct cagcacaagt ggcggcagca tctcctgggc tgacttcgtc aacgagatgc
      541 tggctaaagg cgaggtgcag cgtgtgcagg tggtgcccga gagtgatgtg gtggaagtct
      601 acctgcatcc aggagctgtg gtgtttgggc ggcctcggct ggccttgatg taccggatgc
      661 aggttgcaaa catcgacaaa tttgaagaga agcttcgagc tgctgaagat gaactgaaca
      721 tcgagagcaa ggacaggatt cccgtgtcct acaagcggac aggattcttt ggaaatgccc
      781 tctatgccct ggggatgact gcagtgggct tggccatcct gtggtatgtt ttcagactgg
      841 ctgggatgac cggaagggaa ggcggattca gtgcctttaa tcagcttaaa atggcgcgct
      901 tcaccatcgt ggacgggaag acggggaaag gagtcagctt ccaggatgtg gcgggaatgc
      961 acgaagccaa gctggaagtc cgagagtttg tggattatct gaagagcccg gagcgtttcc
     1021 ttcagctggg tgccaaggtt ccaaagggtg ccctgctgct gggaccccct ggttgtggga
     1081 agacgctgtt ggccaaggca gtggccacgg aggctcaggt gcccttttta gcaatggctg
     1141 gcccagagtt tgtggaggtc attggaggcc tgggagccgc ccgagtgcgc agcctcttca
     1201 aggaagcccg ggccagggcc ccttgcattg tgtacattga tgagatcgat gctgtgggga
     1261 agaagcgctc cacctccatg tccgggttct ccaacacaga agaggagcag accctcaacc
     1321 agctcctcgt agagatggac ggaatgggca ccgcagacca cgtcatcgtc ttggcatcca
     1381 ccaaccgagc cgatgtcctg gacaacgctc tgatgaggcc cggtcggctc gacaggcacg
     1441 tcttcatcga tcttcccact ctccaggaga ggcgggagat tttcgagcag cacctgaaag
     1501 gcctcaagtt gacccagccc agcagttttt actcccagcg gctggcagag ctgactcctg
     1561 gattcagtgg cgccgacatc gccaacatct gcaacgaggc tgcactgcac gctgcacgcg
     1621 aggggcacac atccgtccac acgttcaact tcgagtatgc tgtggagcgc gtcattgctg
     1681 gaactgctaa aaagagtaag atcctttcca aggaggagca gagagtggtt gctttccatg
     1741 agtctggcca tgccctggtc ggttggctgc tggaacacac ggaggctgtg atgaaggtct
     1801 ccatagcacc tcggacaaac gctgctctgg gcttctctca gatgctccct cgggaccagt
     1861 acctcttcac caaggagcag ctgtttgagc ggatgtgcat ggccctaggc ggccgtgcag
     1921 ctgaagccat ctcattcagc agggtcacct ctggggccca ggatgatttg aggaaggtta
     1981 cccgtatcgc ctactccatg gtgaaacagt ttgggatggc tcctagcatt gggcccgtat
     2041 ccttccctga ggcacaagag ggcctcgtgg gcattggacg ccgtcccttc agccagggtc
     2101 tccagcagat gatggaccat gaagcaagac tgctggtggc cagagcctac agacacactg
     2161 agaaggtgct gctggacaac ctggacaagc tgcaggcgct ggcgaatgcc cttctggaaa
     2221 aggaagtgat aaactatgag gacattgagg cgctcattgg cccgccgccc catgggccaa
     2281 agaaaatgat tgcaccacag aaatggattg atgctgaaaa ggagaaacaa gcctcagggg
     2341 aggaggaggc tccggctccc tagcccccac ctccaaggcc cagataatgg cttcctccat
     2401 gcacctgcag ttatcacaga acttgtcata gctgccctcc acctccgaga tgcttttcac
     2461 ctgaacttaa acctcagcct ctgtcagctc tctggtttct gatgaagact tgtgatatct
     2521 atttattgat ttatgattag taaattgttt gcagagaaac ggaacttccc atctgtactg
     2581 cttttcatgt gggaagtgca catgcttgag ttgagcccct ggggcttcag atgccatctc
     2641 tgtgtggctc gcagctcgaa aagtagccca acagttggac tgaatgattc cgtttgtgtg
     2701 ctggattccc tcagaatgct aatgggatct aagatgaaag accctctgag cccgtggtcc
     2761 tcctcagagg gctccctcac tgaggggcca acgtcagaac aagcactgga agattctaat
     2821 actgccacct actgctgtgt gcatctgcaa ctggagaccc tcccccgcct ttccttgtgc
     2881 agtgtgcttg acttcctcta ccaaaacgga tacctctcac acattttgtg atagggaagc
     2941 cacatttgag ctgtgcagtc acgggtcttg ttttcacttt atactttgag cccctcagtg
     3001 gcaagaggcg agccctttgt gtaggctcaa accatgcagt tcaaaccatg cagggtagcc
     3061 acaggcattt gctgcttcgt agttcctgtg tgtggtgccc cgcccttcct gtgtgtgtgg
     3121 agcttgggtt acagaaactt cctgacacag cacattgttg ttagtgccct gtgtggtgca
     3181 cctgaggaag ctgttgtagg acctgcagcg tctggggtgc tgaaggagct tgcagtgtaa
     3241 gaacattgtg ggtttcgggg ctggggattt agctcagtgg tagagcgctt gcctaggaag
     3301 cgcaaggccc tgggttcggt ccccagctcc gaaaaaaaga accaaaaaaa aaaaaaaaaa
     3361 gaacattgtg ggtttcatct gaggtctggt ttttaaccaa agattagcac ataactaggt
     3421 tttctatttc tctgaagcag ggtcttgggc aggcaagata gctctgcaag cctggtgacc
     3481 tgagtccagt cactgggcta ctgtgattgt ccccgactag tcctgtcaag gcgcacacat
     3541 gcccggggag ccaggaacag gcgggccttg atgagtgttg ggccccgctt agttgacctc
     3601 cacaccagct aaggctacat aatgagaccc catctctata aaagactgat aataaacaaa
     3661 tgtggacact gaaccactga aacag
//
