LOCUS       XM_039098087            1856 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus spermatogenesis associated glutamate
            (E)-rich protein 4C (Speer4c), mRNA.
ACCESSION   XM_039098087
VERSION     XM_039098087.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051354.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039098087.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1856
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1856
                     /gene="Speer4c"
                     /note="spermatogenesis associated glutamate (E)-rich
                     protein 4C; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:685199"
                     /db_xref="RGD:1597684"
     CDS             360..1004
                     /gene="Speer4c"
                     /codon_start=1
                     /product="disks large homolog 5-like"
                     /protein_id="XP_038954015.1"
                     /db_xref="GeneID:685199"
                     /db_xref="RGD:1597684"
                     /translation="MFARLHRRFGRVDVDGEESRVKQTKPKSNDGHRTWSCGMWKACR
                     QTSSPETVLNKVQGNEEEERLIRELELTTKERNELNDRLLYVTDVSMNKSPYFRPNPF
                     YEKLKIKEKEVMSLLHNLEIKNTEHCQKFQELKKEINFYRNLQSRLLMDQACMKKKLV
                     TLKQESKEVQRYLFELNPNDEDEQEKTSILQTQQNLVSEMQERWNRTHPRKTAT"
ORIGIN      
        1 atttgaggta ggatgaaaca tttctgtgca gggattcagg aggaagcact catttagata
       61 cagagcaatg acttaggttt ttccactcaa gcctagagcc aaatttggct ttggaagcat
      121 gtggtgctca gtggctatgc cacagggaag tctcccgaaa agggcacatc agcttttgct
      181 cagtacaggg agaacataag cagggaggca aagtctgttc cccgtgacat cagccgtccc
      241 ttcttggaca ttctattgtc tcctagagac ttcttggaat ccctgtgatg tcaccagtgt
      301 tgtagtgaca accagttccc tactttttct ctcagtgtcc aaaggatata tccacaggca
      361 tgtttgcccg tcttcacagg cgctttggga gagttgatgt tgatggagaa gagtctagag
      421 tgaagcaaac gaaacctaaa agtaatgatg gacacaggac gtggtcatgt ggaatgtgga
      481 aggcctgcag acagacgtca tcccctgaaa ctgtcctaaa caaggtgcag ggcaacgagg
      541 aagaggagag gctgattaga gagctcgagc taactaccaa ggagagaaat gagctgaatg
      601 atcgcctcct ttatgtgaca gatgtatcca tgaacaagag cccctacttc aggccaaatc
      661 cattttatga aaaattgaag ataaaggaga aagaggtcat gtcattactg cacaacttag
      721 agataaagaa cactgaacat tgtcagaaat ttcaggagct caagaaggag attaacttct
      781 atcgcaacct gcagagccgg ctcctgatgg accaggcatg catgaagaag aagttggtca
      841 cattgaagca ggagagcaag gaggtacagc ggtacttgtt tgagttgaac ccgaatgatg
      901 aagacgaaca ggagaagacc agcatcctcc agacccagca aaatttggtc tcagagatgc
      961 aggagagatg gaataggaca catcccagga agacggccac ctgaagaatg agtttctttc
     1021 tcaggagttc cctgctgacg accatcgtca agtgccaaag ccttttttgg gtgaatgttc
     1081 ctcatctcag ttaatttttt caatggttag agaccctaaa tttatctatc agtatgccag
     1141 cctgtctgac tgaggtcttc atccctttct catatccaca acaccgtttg agagacaact
     1201 gaggggactt ccttgacatc tcgtgtccta caacagaaac agcagtacaa ttgttcttct
     1261 aaatgtccat cataaaacgt taagaaacat ttttggttat gattttcatt gaagtttgat
     1321 ttttgttgtt tcatagttat atattcctgt tacttttttt catttttgat aacactttag
     1381 ttgttcatta agactgtttt ttgttaattg tattccttat gaataaaaat tgatttggaa
     1441 ctcttgactc ttaagaccac cttcgttatt caatagtcct ttcccctcct gtagccttag
     1501 aactgacatc tagaattgga tctttgaatg ttcgagggaa catgggctaa atagtgaatt
     1561 caaagccacc aagggctaca cagggtgata gggtcttttg tggggatact gtgacttttt
     1621 tttttatgga cacacacttt atgatgcaat cactgccata ctctatccat gctgtcatgt
     1681 gttctgctcc tcctagtcta tatcagtcca caacacacat tccttattga ttgtgtgcac
     1741 cagacattga gtaaaataca ctcattgctg tacagctgca gaaaaaacat gacaacgttc
     1801 acaaaggaat acagaagtaa tccttaccga gaaccatgtg cctcagtttt tcttac
//
