LOCUS       NM_001039017            2829 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus sperm antigen with calponin homology and
            coiled-coil domains 1 (Specc1), transcript variant 1, mRNA.
ACCESSION   NM_001039017 XM_220544
VERSION     NM_001039017.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2829)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC099105.1.
            
            [WARNING] On Aug 9, 2024 this sequence was replaced by
            NM_001039017.2.
            
            On Jan 12, 2006 this sequence version replaced XM_220544.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC099105.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132265, SAMD00132266
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2829
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q22-q23"
     gene            1..2829
                     /gene="Specc1"
                     /gene_synonym="Cytsb; RGD1309718"
                     /note="sperm antigen with calponin homology and
                     coiled-coil domains 1"
                     /db_xref="GeneID:303208"
                     /db_xref="RGD:1309718"
     exon            1..73
                     /gene="Specc1"
                     /gene_synonym="Cytsb; RGD1309718"
                     /inference="alignment:Splign:2.1.0"
     exon            74..233
                     /gene="Specc1"
                     /gene_synonym="Cytsb; RGD1309718"
                     /inference="alignment:Splign:2.1.0"
     CDS             87..2432
                     /gene="Specc1"
                     /gene_synonym="Cytsb; RGD1309718"
                     /note="isoform 1 is encoded by transcript variant 1;
                     cytospin-B"
                     /codon_start=1
                     /product="cytospin-B isoform 1"
                     /protein_id="NP_001034106.1"
                     /db_xref="GeneID:303208"
                     /db_xref="RGD:1309718"
                     /translation="MRSATKPWSPVAKAGSHGPDRTRPLPGTPSGMKSSKSSTSLAFE
                     SRLSKLKRASSEDMLNKPGSASSGVARLKKTSTSGAISELTESRLRSNTGTIPTTKRT
                     GIPAPRELSVTISRERSVPRGPSSSKKLGSSPTSSCNPTPTKHLRTTPAKPKQEHEGT
                     EKAVLESQVRELLAEAKTKDSEINRLRSELKKCKERWALGTEDSNASDPSTEGTSVPG
                     SDTEPLIRTLEEKNKTFQKELADLEEENRALKEKLTYLEQSPNSEGAASHTGDSSCPT
                     SITHESSFGSPVGNELSSETDEYRRNTHGSALRTSGSSSSDVTKASLSPDASDFEHIT
                     ADTPSRPLSATSNPFKSSKGSPTGSSPNNASELSLASLTEKIQKMEENQHSTAEELQA
                     TLQELSDQQQMVQELTAENEKLVDEKTILETSFHQHRERAEQLSQENEKLINLLQERV
                     KNEEPSAQGGKILELEQKCTDILEKSRFEREKLLNIQQQLTCSLRKVEEENQGAIDMI
                     KHLKEENEKLSGFLEHERCNNSVMAKTLEECRVTLEGLKMENGSLKAHLEADKQKAVE
                     ASSTMGQTAENFEVQEMLKVARAEKDQLQLSCTELRQELLKANGEIKHVSSLLAKMEK
                     DYSYLKEVCDHQAEQLSRTSLKLQEKASESDAEIKDMKETIFELEDQVEQHRAVKLHN
                     NQLISELESSVVKLEEQKSDLERQLKTLTKQIKEETEEWRRFQADLQTAVVVANDIKC
                     EAQQELRTVKRRLLEEEEKNARLQKELGDIQGHSSSMVSVS"
     exon            234..366
                     /gene="Specc1"
                     /gene_synonym="Cytsb; RGD1309718"
                     /inference="alignment:Splign:2.1.0"
     exon            367..1949
                     /gene="Specc1"
                     /gene_synonym="Cytsb; RGD1309718"
                     /inference="alignment:Splign:2.1.0"
     exon            1950..2157
                     /gene="Specc1"
                     /gene_synonym="Cytsb; RGD1309718"
                     /inference="alignment:Splign:2.1.0"
     exon            2158..2231
                     /gene="Specc1"
                     /gene_synonym="Cytsb; RGD1309718"
                     /inference="alignment:Splign:2.1.0"
     exon            2232..2410
                     /gene="Specc1"
                     /gene_synonym="Cytsb; RGD1309718"
                     /inference="alignment:Splign:2.1.0"
     exon            2411..2796
                     /gene="Specc1"
                     /gene_synonym="Cytsb; RGD1309718"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccgtgagctt ggaaagccgc ggtagctgcg ggctgcggcg gcgcgggagt cctgtgcgag
       61 agaaccacgg cagagagaag gacatcatgc ggagtgccac caagccctgg agtccagttg
      121 ccaaagcagg cagccatggt cctgatcgca ctcggcccct ccctgggacc ccttctggca
      181 tgaagagctc caagtcttca acctcgctgg ccttcgagtc tcggcttagt aagctcaaga
      241 gggccagcag cgaggacatg ctcaacaaac ctggaagtgc ctcatcaggg gtggcgagac
      301 tgaagaagac ctcaacttcc ggagccatct ctgagctcac cgagagccgc ctgaggagca
      361 acacagggac tattccaaca actaaacgga cgggcattcc agctccacgg gaactctctg
      421 taactatctc cagagagaga tctgtgccac gtggtccctc cagctcaaag aagttgggct
      481 ccagtccaac ttcctcctgc aatcccactc ctaccaagca cctaaggacc acccctgcaa
      541 aacctaagca agagcatgaa ggtacagaga aggctgtgct cgagtcccag gtacgcgaac
      601 ttctggcaga agccaaaacc aaagacagtg aaatcaacag gcttcgaagt gaactaaaaa
      661 aatgtaaaga gagatgggcc ctgggcactg aggactccaa tgcttcagac ccaagtacag
      721 agggaacatc agtcccagga agtgacacag agcctttgat aagaaccctg gaggagaaga
      781 acaagacctt tcagaaagag cttgctgacc tagaggaaga aaacagggcc ttgaaggaga
      841 aactgactta tcttgaacag tcaccaaatt cagaaggggc agcaagtcac actggtgaca
      901 gcagctgtcc aacatctata acccacgagt ccagttttgg aagcccagtt ggaaatgagc
      961 tgtccagtga aacggatgag tacagaagaa acacacatgg gagtgcgttg cggacatcag
     1021 ggtcttcaag cagtgatgtc actaaagctt ctctatcacc ggatgcctca gattttgagc
     1081 atatcactgc agatacccca tctcggcccc tgtcagccac tagcaacccc tttaagagct
     1141 ccaagggctc ccctactggg agctccccaa acaatgcaag tgagctgtcc ttggcatctc
     1201 ttactgagaa gatacaaaag atggaggaga atcagcacag cactgcggaa gagctgcagg
     1261 ctactctgca ggaattatca gaccagcagc agatggtgca ggaactgaca gcggagaatg
     1321 agaagctagt ggacgagaag accattttag agacctcctt ccaccagcac cgagagagag
     1381 cagaacagct gagtcaggaa aatgagaaac tgatcaacct tttacaagag cgagtgaaga
     1441 atgaggaacc tagtgcccaa ggaggaaaga tcctcgagct ggagcagaag tgcacagata
     1501 ttcttgagaa gagccgcttt gaaagggaga agctgctcaa cattcagcag cagttgacct
     1561 gtagcctacg gaaggtcgag gaagaaaacc aaggcgctat agacatgatt aagcacctga
     1621 aggaagaaaa tgaaaagctg agtgggttcc tagaacatga gcggtgtaat aatagtgtga
     1681 tggccaaaac tttggaggaa tgtagagtta ccttagaagg cttgaaaatg gagaatgggt
     1741 ccttgaaggc tcatttggag gctgataagc aaaaggccgt agaggccagc agtaccatgg
     1801 ggcagacagc agagaacttc gaggttcagg aaatgctgaa agtggctcga gctgagaaag
     1861 atcagttgca actgtcttgc acagagctca gacaagaatt gctaaaggca aatggtgaaa
     1921 ttaaacacgt ttccagcctg ctagctaaga tggaaaaaga ttattcttac ctgaaggaag
     1981 tctgtgatca tcaagcagaa cagctgagca gaaccagcct aaaattacaa gaaaaagctt
     2041 cagaaagtga tgcagaaatc aaagacatga aagaaaccat atttgaactg gaagaccagg
     2101 tggaacagca ccgtgctgtc aagttacaca ataaccaact catcagcgaa ctggaaagca
     2161 gtgtggtcaa gctggaagag cagaagtcag acctagagcg gcaactaaag acgctaacaa
     2221 aacagataaa ggaggaaact gaggaatgga ggcggttcca ggcagacctg cagactgcag
     2281 tggtagtggc caacgacatc aagtgtgagg ctcagcagga actgcggact gtgaagagga
     2341 ggttgctgga agaggaagag aagaacgcca ggctgcagaa ggagctggga gacatacagg
     2401 ggcatagcag ctccatggtc tctgtcagct agcagagcat ttggtggaag aaagagccca
     2461 gcccttgcca tgattggaaa ctactgccat ttctatatga aaagggggag tctgtagagg
     2521 agagtaccac tatgtaaaga gctcactgtc tcccatgcca ctcactattc cacacaaagt
     2581 catcacagcc aaagtttcct tagtttcctc ttgcacattg gaatcaactc actgcatgat
     2641 cacatattca aaattatttc cctctttttc tcagaaaatc agcattctct ctctcttccc
     2701 tccctccctc cttccctcct tccttccctc cctcccttct tcctttcctc ccttcctttc
     2761 tctctggaga ataaaatgaa attctgaaaa acaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     2821 aaaaaaaaa
//
