LOCUS       NM_001395111            2911 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus spermatogenesis associated, serine-rich 2
            (Spats2), mRNA.
ACCESSION   NM_001395111 XM_006257350
VERSION     NM_001395111.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2911)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   2  (bases 1 to 2911)
  AUTHORS   Senoo,M., Hoshino,S., Mochida,N., Matsumura,Y. and Habu,S.
  TITLE     Identification of a novel protein p59(scr), which is expressed at
            specific stages of mouse spermatogenesis
  JOURNAL   Biochem Biophys Res Commun 292 (4), 992-998 (2002)
   PUBMED   11944913
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000007.1.
            
            On Jun 3, 2021 this sequence version replaced XM_006257350.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643285.29558.1,
                                           SRR26643293.43295.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-159               JAXUCZ010000007.1  132159021-132159179
            160-456             JAXUCZ010000007.1  132182058-132182354
            457-536             JAXUCZ010000007.1  132192141-132192220
            537-645             JAXUCZ010000007.1  132196137-132196245
            646-695             JAXUCZ010000007.1  132197195-132197244
            696-954             JAXUCZ010000007.1  132201044-132201302
            955-1134            JAXUCZ010000007.1  132202554-132202733
            1135-1270           JAXUCZ010000007.1  132207959-132208094
            1271-1329           JAXUCZ010000007.1  132220356-132220414
            1330-1439           JAXUCZ010000007.1  132225267-132225376
            1440-1542           JAXUCZ010000007.1  132228328-132228430
            1543-1805           JAXUCZ010000007.1  132230046-132230308
            1806-2911           JAXUCZ010000007.1  132231191-132232296
FEATURES             Location/Qualifiers
     source          1..2911
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q36"
     gene            1..2911
                     /gene="Spats2"
                     /note="spermatogenesis associated, serine-rich 2"
                     /db_xref="GeneID:300221"
                     /db_xref="RGD:1304780"
     exon            1..159
                     /gene="Spats2"
                     /inference="alignment:Splign:2.1.0"
     exon            160..456
                     /gene="Spats2"
                     /inference="alignment:Splign:2.1.0"
     CDS             432..2117
                     /gene="Spats2"
                     /codon_start=1
                     /product="spermatogenesis-associated serine-rich protein
                     2"
                     /protein_id="NP_001382040.1"
                     /db_xref="GeneID:300221"
                     /db_xref="RGD:1304780"
                     /translation="MSRKQSQKDSSGFIFDLQSNTVLAQGGTFENMKEKINAVRAIVP
                     NKSNNEIILVLQHFDNCVDKTVQAFMEGSASEVLKEWIVTGKKKNKKKKSKPKPASEA
                     SGSAPDSSKSAPAEEGQPASSEKGSINGYHVNGAINDTESVDSLSEGLETLSIDAREL
                     EDPEFATADALDRAGSVLENGVSDFEPKSLTTHSISNVQQSRNAAKSLSRATTGAQVS
                     NLGMENVPLSSTNKKLGSNIEKSVKDLQRCTVSLARYRVVVKEEMDASIKKMKQAFAE
                     LQSCLMDREVALLAEMDKVKAEAMEILLSRQKKAELLKKMTDVAVRMSEEQLVELRAD
                     IKHFVSERKYDEDLGRVARFTCDVETLKQSIDSFGQVSHPKNSYSTRSRCSSLLPVSC
                     SGSTRSRCSSLLPVSCSGPSDVSAASSAPDASAPSLPGANKRNSAPREASAAMTNSSD
                     RPCQAHREVFSGNRRGGQGYRPQNQKTTDPPNQGRHDNAGRYRNSSWYSSGPRHQAVP
                     PQAPGSAGEWSRPYSAGTNGTGASSEPSPPKPSFKKGLPQRKPRASQAEAANS"
     exon            457..536
                     /gene="Spats2"
                     /inference="alignment:Splign:2.1.0"
     exon            537..645
                     /gene="Spats2"
                     /inference="alignment:Splign:2.1.0"
     exon            646..695
                     /gene="Spats2"
                     /inference="alignment:Splign:2.1.0"
     exon            696..954
                     /gene="Spats2"
                     /inference="alignment:Splign:2.1.0"
     exon            955..1134
                     /gene="Spats2"
                     /inference="alignment:Splign:2.1.0"
     exon            1135..1270
                     /gene="Spats2"
                     /inference="alignment:Splign:2.1.0"
     exon            1271..1329
                     /gene="Spats2"
                     /inference="alignment:Splign:2.1.0"
     exon            1330..1439
                     /gene="Spats2"
                     /inference="alignment:Splign:2.1.0"
     exon            1440..1542
                     /gene="Spats2"
                     /inference="alignment:Splign:2.1.0"
     exon            1543..1805
                     /gene="Spats2"
                     /inference="alignment:Splign:2.1.0"
     exon            1806..2911
                     /gene="Spats2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcgagctgg gggaggagcg cggtagcgac ggcggcggct cccgaggacg agggcgagga
       61 ggaggcggag gctcttcttt cctcatccca gaccggggag cgtccggaac gcagagcccg
      121 gaactggggg acgcggcggc tgcagggagc ccgggctaga atctccctgg ggaaagacat
      181 gactgactgc aatgatacat cctgacaaga agttgatacc agagaaggaa aggaaactga
      241 cagctagtga acagaatttt aaacaaccag gattttgtat ttattactcc caactataga
      301 cttctattgc cacttttaaa tcagcaggat tcccagaact tggacgaaga tatttcttct
      361 gttttgggtt tttttttttt cttcctcttt tttgttttcc ttttttaaaa tttgatcgtg
      421 aggaaactgc aatgtctagg aaacaaagcc agaaagattc atcaggattc atttttgatt
      481 tgcagtccaa tacggtactg gcccagggag gaacctttga gaacatgaag gagaagataa
      541 atgcggtgcg tgcaatagtt cccaataaga gcaataatga gatcatcctg gttctgcagc
      601 actttgataa ctgtgtggac aaaacagtgc aagcgttcat ggaaggaagt gccagtgaag
      661 tgctcaaaga atggatagta actggcaaaa aaaagaacaa aaagaagaaa agcaagccaa
      721 agcctgcatc agaagcaagc ggcagtgccc cagactccag taagtcggcc cccgctgaag
      781 aggggcagcc tgcatcgtca gagaaaggca gcatcaacgg ttaccatgtt aacggtgcca
      841 tcaacgacac cgagtccgtg gactcactca gcgaaggtct ggagacgctc tcaatagatg
      901 ccagagaact ggaggatccc gagtttgcca ccgcagatgc actggacaga gccggttctg
      961 tgctggagaa tggtgtctct gactttgagc ccaagtcttt gactacgcac tcaatctcga
     1021 acgtccagca atcccggaat gctgccaaat ctctctccag agccaccaca ggggcgcagg
     1081 tgtcaaatct gggaatggag aatgttccac tctcgtctac caataaaaag ctaggttcta
     1141 acattgagaa gtcggtgaaa gacctccagc gctgcactgt gtccctggca cggtaccgag
     1201 ttgtcgtcaa agaggagatg gacgcgtcca tcaagaaaat gaagcaagcc tttgccgaat
     1261 tgcaaagctg tttaatggat cgagaagtgg cactgctggc tgagatggat aaagtgaaag
     1321 ctgaagcaat ggaaatcttg ctcagccggc agaagaaagc agagctcctc aagaagatga
     1381 ccgatgtggc cgtccggatg tcagaggagc agctggtcga actcagggct gatatcaagc
     1441 acttcgttag tgagcgtaaa tacgatgaag accttgggag agtagcccgg ttcacctgtg
     1501 acgtagagac tctgaagcag agtattgatt ccttcggaca agtgtctcat ccgaagaaca
     1561 gctactcaac ccggtctcgg tgcagctcgc tgctgccggt gtcctgcagt ggctcgaccc
     1621 ggtcacggtg cagctcactg ctgcccgtgt cctgcagtgg cccaagtgac gtctctgctg
     1681 cttcctccgc ccctgacgcc tctgcgccca gcctcccagg tgctaacaag agaaactctg
     1741 ccccaagaga ggcttctgca gccatgacga actccagtga ccggccctgc caggctcatc
     1801 gggaggtgtt ttcaggcaac aggagaggag gacaaggcta caggccacaa aaccaaaaga
     1861 ccactgaccc cccaaaccaa gggcggcatg acaatgcggg tcgctacagg aacagctcgt
     1921 ggtactcatc tgggcccagg catcaggctg ttccgcctca agccccagga agcgctggcg
     1981 agtggagccg cccttactct gcggggacca atggaactgg agccagctcg gagccaagcc
     2041 cacccaagcc ttcattcaaa aaggggctcc cacagcgcaa accaagggcc tcccaggctg
     2101 aagctgcgaa ctcttgaggg ggattccagt tgcctctctt ctctcctatc cagttcaacc
     2161 taataactgg actttaggaa atgtatactt agatttaata acaaaaagaa atttatgcat
     2221 atctctttgg gccatcctaa atatttttga tttctactct cattttttga acgaaagctg
     2281 ttttcccttg gcctttccta gtgataatgg actgactctg gttggtcgtt ttcaccagga
     2341 agcagggcaa ctgttgccag cttcccaaag gcgagcagcc ttcttcccag tgcacccacc
     2401 ctccacggcc tgccacggag gctctcagga ggaacagtgg tccgtcggaa gcaggtgcca
     2461 cacgtgcctg ccaggctccc actagttgac agtgggagtg ggagtaggaa tgagggactt
     2521 tatactgtac tgggtctgcc ggaaaaggga aatacgtgtt agttcctgca acagagagca
     2581 cggggagcat ctgagcctgc ctcggtctgg tgcccgagat ctgacactcg agtcagggtt
     2641 tccgtccgta cttaacctgc agttccttcc aaatgcccaa agccttgttt cccagtctga
     2701 ggaagtctat gggaaagtag cattttaagt ttttttaaag aaaaggtttt ctttgtttca
     2761 gtgttggaga ttttttgttg ctctcccctc tcctgaatcc tgttatgaac caagtttatc
     2821 tgatataatt agtgttcatc taaggtgtta ctcgccacgg ttgctgcggt catcttgaag
     2881 tgaataaata aaggctagtg cctcacgtga c
//
