LOCUS       XM_006240414            2010 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus spermatogenesis associated 7 (Spata7),
            transcript variant X6, mRNA.
ACCESSION   XM_006240414
VERSION     XM_006240414.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006240414.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006240414.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2010
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2010
                     /gene="Spata7"
                     /gene_synonym="RSD-3; Wmp1"
                     /note="spermatogenesis associated 7; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 15
                     ESTs, 1 long SRA read, 1 Protein, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     139 samples with support for all annotated introns"
                     /db_xref="GeneID:192225"
                     /db_xref="RGD:621010"
     CDS             290..1870
                     /gene="Spata7"
                     /gene_synonym="RSD-3; Wmp1"
                     /codon_start=1
                     /product="spermatogenesis-associated protein 7 homolog
                     isoform X4"
                     /protein_id="XP_006240476.1"
                     /db_xref="GeneID:192225"
                     /db_xref="RGD:621010"
                     /translation="MAVHYNKILSAKAAVDCSIPVSVNASIKYADQQRREKLRKELAR
                     CEKEFKLSKSAMQTNSKMNSKFFVNSLQRPSGEPQDQDVLIEERLTRYPSFSKSLIPS
                     PEGLHLSLPESNKILMNGTQKYPSTAPPRYSGCGHGYDRRPRSAHQFQVVISKTPSGD
                     LLEKHADLFSNNQSPFTPRTLKTEAKSFLSQYRYYTPAKRRRDFSDQRMEAETQTELS
                     SFNSELGTAEKKSSKDSDMSIKQAPNYMRNGAEDKIAPLSLQGQNLAWDKSKDGILQP
                     SSERAPCTQFSPDSKIYSDEEELLYLSFMENVTDEILKLGLFSNRFLERLFERHIRKN
                     KHHLEEGKMRYLLHGLKVDLGCISEEEQNSFRIFNEFHFQKALTSRENRFINDTEAVN
                     HHERQQYQEALNMLSSVPKDENKMFSFPGEFLLPAHKVKHSEGVIVQQVNDETDFEAL
                     PWDGNNPSVSDSFIDQETSVDVIEGDSDFEMVETSRELCCLSTSLSPSVPLPSIEGGS
                     NHDKELSTLKIMEMSIED"
ORIGIN      
        1 accggcctgg cgacggtcac tgtggcccat tgcgcccccg cgggccaggt ctttccaagt
       61 ttcacctccg ctgcgggggg cccggcttgg tccctgtaag aaccaagggg acaaccgcgg
      121 aggccgcaga aggactaggc atggatggca gccggagaga gccaccactg tccttcccag
      181 atacagcccg ccatgcctat ttacaggaca cttgagcacc aagagcaatg ctttttgcac
      241 tgactcctct tctctcagac taaccactct ccagctgatc aagaatcaca tggctgttca
      301 ctataataaa atcctttcag ccaaagccgc ggtggattgc tcaattccag taagtgtgaa
      361 tgctagcatc aaatatgctg accaacaacg aagagagaaa ctgaggaagg agttggcacg
      421 atgtgaaaag gagtttaaat taagtaaatc tgcgatgcag accaattcta agatgaattc
      481 caagttcttt gtaaactctc tacagaggcc ctcaggggaa ccacaagacc aggatgtgtt
      541 aattgaagaa agattgacaa gatacccatc attttcaaag tcactcatcc cttcgccaga
      601 gggactacat ctaagtctac ctgagtcaaa taaaatcctc atgaatggca cccagaagta
      661 tcccagcacc gctccaccca ggtactcagg ctgtggacat ggctatgaca ggaggcctag
      721 gagtgcccac cagttccagg tagtcatttc caagacgcct agtggagatc ttttggaaaa
      781 gcacgctgac ctcttctcta acaaccaatc accattcact ccacggactt taaaaacaga
      841 agcaaagtcc ttcctttcac agtaccgcta ttacacacct gctaaaagaa gaagggattt
      901 ctcagatcag cggatggagg ctgaaaccca aactgaatta agcagcttta actctgagct
      961 tgggacagct gaaaaaaaga gctcaaagga ttcagacatg agcataaaac aggcacctaa
     1021 ttacatgaga aatggtgctg aagacaaaat agctccttta tccttacaag gacaaaactt
     1081 agcatgggac aagagtaaag atgggattct gcagccgtcc tcagaaaggg caccctgcac
     1141 acagttttct ccagatagta aaatctactc tgatgaagaa gagctgctgt acctcagctt
     1201 catggaaaat gtgacggatg aaatcttgaa acttggttta ttttctaaca ggtttttaga
     1261 acgactgttt gagcgacata taagaaaaaa taaacatcac ttggaggagg ggaagatgcg
     1321 ctacctgctg catggactga aggttgactt aggctgcatc tctgaggaag agcaaaacag
     1381 tttcagaata ttcaatgaat ttcattttca aaaggctctg acttcaagag aaaacaggtt
     1441 tataaatgat acagaagcag taaatcatca tgaacgtcag cagtaccagg aggcactgaa
     1501 catgctgtca tctgtgccaa aggacgaaaa caagatgttc tctttcccgg gtgaatttct
     1561 gttacctgcc cataaagtca agcattcaga aggtgttata gtccaacagg tcaatgatga
     1621 aacagatttc gaagccttac cctgggacgg aaacaatcca agtgtttctg acagttttat
     1681 agaccaggag acctctgtgg atgtcattga aggtgacagt gactttgaaa tggttgagac
     1741 ttccagggaa ctctgctgtc tgagcacatc actgtcccca tctgttccac tccccagcat
     1801 tgaaggtggc agtaatcatg ataaggaatt atcgactcta aaaatcatgg aaatgagcat
     1861 tgaagactga cctttggatc ttcattaata aatactccat gtggccagta actcaatatc
     1921 acttttcttt attttgtccc cttttacata ttaagatttg tgtaatttca atgctgtgta
     1981 ataaattgcc ataaatttag tgtcttgaaa
//
