LOCUS       NM_138862               1958 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus spermatogenesis associated 7 (Spata7), mRNA.
ACCESSION   NM_138862 XM_346772
VERSION     NM_138862.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1958)
  AUTHORS   Dharmat,R., Eblimit,A., Robichaux,M.A., Zhang,Z., Nguyen,T.T.,
            Jung,S.Y., He,F., Jain,A., Li,Y., Qin,J., Overbeek,P., Roepman,R.,
            Mardon,G., Wensel,T.G. and Chen,R.
  TITLE     SPATA7 maintains a novel photoreceptor-specific zone in the distal
            connecting cilium
  JOURNAL   J Cell Biol 217 (8), 2851-2865 (2018)
   PUBMED   29899041
REFERENCE   2  (bases 1 to 1958)
  AUTHORS   Eblimit,A., Nguyen,T.M., Chen,Y., Esteve-Rudd,J., Zhong,H.,
            Letteboer,S., Van Reeuwijk,J., Simons,D.L., Ding,Q., Wu,K.M.,
            Li,Y., Van Beersum,S., Moayedi,Y., Xu,H., Pickard,P., Wang,K.,
            Gan,L., Wu,S.M., Williams,D.S., Mardon,G., Roepman,R. and Chen,R.
  TITLE     Spata7 is a retinal ciliopathy gene critical for correct RPGRIP1
            localization and protein trafficking in the retina
  JOURNAL   Hum Mol Genet 24 (6), 1584-1601 (2015)
   PUBMED   25398945
REFERENCE   3  (bases 1 to 1958)
  AUTHORS   Zhang,X., Liu,H., Zhang,Y., Qiao,Y., Miao,S., Wang,L., Zhang,J.,
            Zong,S. and Koide,S.S.
  TITLE     A novel gene, RSD-3/HSD-3.1, encodes a meiotic-related protein
            expressed in rat and human testis
  JOURNAL   J Mol Med (Berl) 81 (6), 380-387 (2003)
   PUBMED   12736779
  REMARK    GeneRIF: isolation and characterization of RSD-3 expressed in the
            testis
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CK600391.1, BC078728.1, CK470849.1 and JAXUCZ010000006.1.
            
            On Jul 21, 2012 this sequence version replaced NM_138862.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.671983.1,
                                           SRR26360181.1901471.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-23                CK600391.1         1-23
            24-629              BC078728.1         14-619
            630-1015            CK470849.1         294-679
            1016-1859           BC078728.1         742-1585
            1860-1958           JAXUCZ010000006.1  123654903-123655001
FEATURES             Location/Qualifiers
     source          1..1958
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q32"
     gene            1..1958
                     /gene="Spata7"
                     /gene_synonym="RSD-3; Wmp1"
                     /note="spermatogenesis associated 7"
                     /db_xref="GeneID:192225"
                     /db_xref="RGD:621010"
     exon            1..103
                     /gene="Spata7"
                     /gene_synonym="RSD-3; Wmp1"
                     /inference="alignment:Splign:2.1.0"
     CDS             85..1818
                     /gene="Spata7"
                     /gene_synonym="RSD-3; Wmp1"
                     /note="fertility-related protein WMP1; sperm DNA no.3"
                     /codon_start=1
                     /product="spermatogenesis-associated protein 7 homolog"
                     /protein_id="NP_620217.2"
                     /db_xref="GeneID:192225"
                     /db_xref="RGD:621010"
                     /translation="MDGSRRVRATTVLPRYSPPCLFTGHLSTKSNAFCTDSSSLRLTT
                     LQLIKNHMAVHYNKILSAKAAVDCSIPVSVNASIKYADQQRREKLRKELARCEKEFKL
                     SKSAMQTNSKMNSKFFVNSLQRPSGEPQDQDVLIEERLTRYPSFSKSLIPSPEGLHLS
                     LPESNKILMNGTQKYPSTAPPRYSGCGHGYDRRPRSAHQFQVVISKTPSGDLLEKHAD
                     LFSNNQSPFTPRTLKTEAKSFLSQYRYYTPAKRRRDFSDQRMEAETQTELSSFNSELG
                     TAEKKSSKDSDMSIKQAPNYMRNGAEDKIAPLSLQGQNLAWDKSKDGILQPSSERAPC
                     TQFSPDSKIYSDEEELLYLSFMENVTDEILKLGLFSNRFLERLFERHIRKNKHHLEEG
                     KMRYLLHGLKVDLGCISEEEQNSFRIFNEFHFQKALTSRENRFINDTEAVNHHERQQY
                     QEALNMLSSVPKDENKMFSFPGEFLLPAHKVKHSEGVIVQQVNDETDFEALPWDGNNP
                     SVSDSFIDQETSVDVIEGDSDFEMVETSRELCCLSTSLSPSVPLPSIEGGSNHDKELS
                     TLKIMEMSIED"
     exon            104..178
                     /gene="Spata7"
                     /gene_synonym="RSD-3; Wmp1"
                     /inference="alignment:Splign:2.1.0"
     exon            179..274
                     /gene="Spata7"
                     /gene_synonym="RSD-3; Wmp1"
                     /inference="alignment:Splign:2.1.0"
     exon            275..322
                     /gene="Spata7"
                     /gene_synonym="RSD-3; Wmp1"
                     /inference="alignment:Splign:2.1.0"
     exon            323..456
                     /gene="Spata7"
                     /gene_synonym="RSD-3; Wmp1"
                     /inference="alignment:Splign:2.1.0"
     exon            457..893
                     /gene="Spata7"
                     /gene_synonym="RSD-3; Wmp1"
                     /inference="alignment:Splign:2.1.0"
     exon            894..960
                     /gene="Spata7"
                     /gene_synonym="RSD-3; Wmp1"
                     /inference="alignment:Splign:2.1.0"
     exon            961..1076
                     /gene="Spata7"
                     /gene_synonym="RSD-3; Wmp1"
                     /inference="alignment:Splign:2.1.0"
     exon            1077..1121
                     /gene="Spata7"
                     /gene_synonym="RSD-3; Wmp1"
                     /inference="alignment:Splign:2.1.0"
     exon            1122..1199
                     /gene="Spata7"
                     /gene_synonym="RSD-3; Wmp1"
                     /inference="alignment:Splign:2.1.0"
     exon            1200..1257
                     /gene="Spata7"
                     /gene_synonym="RSD-3; Wmp1"
                     /inference="alignment:Splign:2.1.0"
     exon            1258..1958
                     /gene="Spata7"
                     /gene_synonym="RSD-3; Wmp1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aagtttcacc tccgctgcgg ggggcccggc ttggtccctg taagaaccaa ggggacaacc
       61 gcggaggccg cagaaggact aggcatggat ggcagccgga gagtcagagc caccactgtc
      121 cttcccagat acagcccgcc atgcctattt acaggacact tgagcaccaa gagcaatgct
      181 ttttgcactg actcctcttc tctcagacta accactctcc agctgatcaa gaatcacatg
      241 gctgttcact ataataaaat cctttcagcc aaagccgcgg tggattgctc aattccagta
      301 agtgtgaatg ctagcatcaa atatgctgac caacaacgaa gagagaaact gaggaaggag
      361 ttggcacgat gtgaaaagga gtttaaatta agtaaatctg cgatgcagac caattctaag
      421 atgaattcca agttctttgt aaactctcta cagaggccct caggggaacc acaagaccag
      481 gatgtgttaa ttgaagaaag attgacaaga tacccatcat tttcaaagtc actcatccct
      541 tcgccagagg gactacatct aagtctacct gagtcaaata aaatcctcat gaatggcacc
      601 cagaagtatc ccagcaccgc tccacccagg tactcaggct gtggacatgg ctatgacagg
      661 aggcctagga gtgcccacca gttccaggta gtcatttcca agacgcctag tggagatctt
      721 ttggaaaagc acgctgacct cttctctaac aaccaatcac cattcactcc acggacttta
      781 aaaacagaag caaagtcctt cctttcacag taccgctatt acacacctgc taaaagaaga
      841 agggatttct cagatcagcg gatggaggct gaaacccaaa ctgaattaag cagctttaac
      901 tctgagcttg ggacagctga aaaaaagagc tcaaaggatt cagacatgag cataaaacag
      961 gcacctaatt acatgagaaa tggtgctgaa gacaaaatag ctcctttatc cttacaagga
     1021 caaaacttag catgggacaa gagtaaagat gggattctgc agccgtcctc agaaagggca
     1081 ccctgcacac agttttctcc agatagtaaa atctactctg atgaagaaga gctgctgtac
     1141 ctcagcttca tggaaaatgt gacggatgaa atcttgaaac ttggtttatt ttctaacagg
     1201 tttttagaac gactgtttga gcgacatata agaaaaaata aacatcactt ggaggagggg
     1261 aagatgcgct acctgctgca tggactgaag gttgacttag gctgcatctc tgaggaagag
     1321 caaaacagtt tcagaatatt caatgaattt cattttcaaa aggctctgac ttcaagagaa
     1381 aacaggttta taaatgatac agaagcagta aatcatcatg aacgtcagca gtaccaggag
     1441 gcactgaaca tgctgtcatc tgtgccaaag gacgaaaaca agatgttctc tttcccgggt
     1501 gaatttctgt tacctgccca taaagtcaag cattcagaag gtgttatagt ccaacaggtc
     1561 aatgatgaaa cagatttcga agccttaccc tgggacggaa acaatccaag tgtttctgac
     1621 agttttatag accaggagac ctctgtggat gtcattgaag gtgacagtga ctttgaaatg
     1681 gttgagactt ccagggaact ctgctgtctg agcacatcac tgtccccatc tgttccactc
     1741 cccagcattg aaggtggcag taatcatgat aaggaattat cgactctaaa aatcatggaa
     1801 atgagcattg aagactgacc tttggatctt cattaataaa tactccatgt ggccagtaac
     1861 tcaatatcac ttttctttat tttgtcccct tttacatatt aagatttgtg taatttcaat
     1921 gctgtgtaat aaattgccat aaatttagtg tcttgaaa
//
