LOCUS       NM_001014165            1534 bp    mRNA    linear   ROD 07-OCT-2024
DEFINITION  Rattus norvegicus spermatogenesis associated 6-like (Spata6l),
            mRNA.
ACCESSION   NM_001014165 XM_342041
VERSION     NM_001014165.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1534)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   2  (bases 1 to 1534)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC079024.1.
            
            On Apr 20, 2005 this sequence version replaced XM_342041.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC079024.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1534
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q52"
     gene            1..1534
                     /gene="Spata6l"
                     /gene_synonym="RGD1310039"
                     /note="spermatogenesis associated 6-like"
                     /db_xref="GeneID:361747"
                     /db_xref="RGD:1310039"
     exon            1..161
                     /gene="Spata6l"
                     /gene_synonym="RGD1310039"
                     /inference="alignment:Splign:2.1.0"
     CDS             123..1319
                     /gene="Spata6l"
                     /gene_synonym="RGD1310039"
                     /note="uncharacterized protein C9orf68 homolog"
                     /codon_start=1
                     /product="spermatogenesis associated 6-like protein"
                     /protein_id="NP_001014187.1"
                     /db_xref="GeneID:361747"
                     /db_xref="RGD:1310039"
                     /translation="MPLEVVVELQIRAISCPGVFLPDKEVVYLGVYLLNQYLETDCFP
                     SVFPIVIQQSMRFEKVFEEAMDPGAVAELLESFLTRFELVQLVSPAWEELAYYEKNTR
                     DFLFPEPKLTSSHLGMQREVLMKTAIWFPGIAPKLEFSTRTAILECVFPCKNRFLWEE
                     RCKLQQSFSKLNGPANNRKKKPKEKNSDQLSKGTPFWGPSPQRLHLHRPTQRNPGKSF
                     RFLGERKPPFVVRHVDSGNPFGENNLEHHSQKSRRKPKFINFDLAKKRAFSLDSLEAN
                     IKVVREPDERIVLRSQSPPPLNSGHFRKPLLNHQGDVDFHPETTVTTSQLSSPPSPLD
                     HSLLQERFQPCSASMWQKIQERACSLLTPNRAHPKEDSISETNSIHERPSYLLRKHLL
                     REHRYF"
     exon            162..299
                     /gene="Spata6l"
                     /gene_synonym="RGD1310039"
                     /inference="alignment:Splign:2.1.0"
     exon            300..348
                     /gene="Spata6l"
                     /gene_synonym="RGD1310039"
                     /inference="alignment:Splign:2.1.0"
     exon            349..390
                     /gene="Spata6l"
                     /gene_synonym="RGD1310039"
                     /inference="alignment:Splign:2.1.0"
     exon            391..515
                     /gene="Spata6l"
                     /gene_synonym="RGD1310039"
                     /inference="alignment:Splign:2.1.0"
     exon            516..596
                     /gene="Spata6l"
                     /gene_synonym="RGD1310039"
                     /inference="alignment:Splign:2.1.0"
     exon            597..818
                     /gene="Spata6l"
                     /gene_synonym="RGD1310039"
                     /inference="alignment:Splign:2.1.0"
     exon            819..921
                     /gene="Spata6l"
                     /gene_synonym="RGD1310039"
                     /inference="alignment:Splign:2.1.0"
     exon            922..956
                     /gene="Spata6l"
                     /gene_synonym="RGD1310039"
                     /inference="alignment:Splign:2.1.0"
     exon            957..1144
                     /gene="Spata6l"
                     /gene_synonym="RGD1310039"
                     /inference="alignment:Splign:2.1.0"
     exon            1145..1229
                     /gene="Spata6l"
                     /gene_synonym="RGD1310039"
                     /inference="alignment:Splign:2.1.0"
     exon            1230..1331
                     /gene="Spata6l"
                     /gene_synonym="RGD1310039"
                     /inference="alignment:Splign:2.1.0"
     exon            1332..1504
                     /gene="Spata6l"
                     /gene_synonym="RGD1310039"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgaaggggag ggggtggggg tcagggaagc ttctggaaaa acacttgcct tgatgtaaac
       61 taagaaataa ttggttcaag gctcagcaca aagggatctt tgcggtgcac agggaaggaa
      121 ggatgcctct ggaggtggtg gtggagctcc aaatccgggc gatttcttgc ccaggagtgt
      181 tcctgccgga caaggaagtt gtgtaccttg gagtctacct tctgaatcag tacctggaga
      241 cagactgctt tccctctgtg ttccctattg tgattcaaca gagcatgagg tttgaaaagg
      301 tctttgaaga ggcaatggat cctggagctg ttgcagaact tttagaaagc ttcctaacca
      361 ggtttgaatt agtacagcta gtgtctccag catgggaaga gttggcctac tatgaaaaaa
      421 acacccgaga cttcctattc cctgagccca agctgacatc ctcacacctt ggcatgcaga
      481 gggaggtgct catgaagacg gctatttggt ttcccggcat tgctcccaaa ctagagtttt
      541 ctacaaggac agccatccta gagtgtgtgt tcccgtgtaa aaacagattt ctttgggaag
      601 aaaggtgtaa attgcaacag tctttctcaa aactgaacgg accggcaaac aacaggaaaa
      661 agaagccaaa ggagaaaaat tctgaccagc tctccaaagg cacaccattt tggggaccct
      721 ccccacaacg actccatctc caccggccca cacagaggaa ccctggaaag agcttccggt
      781 ttctgggaga aaggaagcct ccatttgtgg ttagacatgt ggacagtgga aacccctttg
      841 gtgaaaataa tttggagcac cattcacaga agtccagaag aaaacctaag tttataaact
      901 ttgatcttgc aaagaaaaga gcgttttctc ttgacagtct cgaggcaaac ataaaggttg
      961 tcagagagcc ggacgagcgg attgtcttaa ggagtcagtc accgccacct ctaaattcag
     1021 gccatttcag aaagcccttg ctcaatcacc aaggggatgt cgatttccac ccggaaacta
     1081 cagttaccac ctctcagctt tccagccctc ccagccctct ggatcactct cttctccaag
     1141 aaaggttcca gccttgttct gcatccatgt ggcagaagat ccaggagagg gcatgcagtc
     1201 ttctgacacc caacagagct cacccaaagg aagattctat ctctgaaaca aattccatcc
     1261 atgaaagacc aagctacctt ctgaggaaac acttgctgcg agagcacaga tatttttaac
     1321 tactacctca tgggaacatg actgaaggat gcagagctcg ctcatggaga cactgacaca
     1381 cgaacagcat ctgctgttgt ctgggttgac ttactggtgc ctagcccttg ttaattcaaa
     1441 tcttatactc ggtcttttgt gcccaaggta agaattattg attaaattct gtctgggact
     1501 ctcaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
//
