LOCUS       NM_134392               2387 bp    mRNA    linear   ROD 07-MAY-2024
DEFINITION  Rattus norvegicus spermatogenesis associated 6 (Spata6), mRNA.
ACCESSION   NM_134392 XM_346747
VERSION     NM_134392.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2387)
  AUTHORS   Yuan,S., Stratton,C.J., Bao,J., Zheng,H., Bhetwal,B.P.,
            Yanagimachi,R. and Yan,W.
  TITLE     Spata6 is required for normal assembly of the sperm connecting
            piece and tight head-tail conjunction
  JOURNAL   Proc Natl Acad Sci U S A 112 (5), E430-E439 (2015)
   PUBMED   25605924
REFERENCE   2  (bases 1 to 2387)
  AUTHORS   Oh,C., Aho,H., Shamsadin,R., Nayernia,K., Muller,C., Sancken,U.,
            Szpirer,C., Engel,W. and Adham,I.M.
  TITLE     Characterization, expression pattern and chromosomal localization
            of the spermatogenesis associated 6 gene (Spata6)
  JOURNAL   Mol Hum Reprod 9 (6), 321-330 (2003)
   PUBMED   12771232
REFERENCE   3  (bases 1 to 2387)
  AUTHORS   Yamano,Y., Ohyama,K., Sano,T., Ohta,M., Shimada,A., Hirakawa,Y.,
            Sugimoto,M. and Morishima,I.
  TITLE     A novel spermatogenesis-related factor-1 gene expressed in maturing
            rat testis
  JOURNAL   Biochem Biophys Res Commun 289 (4), 888-893 (2001)
   PUBMED   11735130
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1 and BC158581.1.
            
            On Sep 12, 2012 this sequence version replaced NM_134392.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF291466.1, BC158581.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-51                JAXUCZ010000005.1  131821585-131821635
            52-1500             BC158581.1         1-1449
            1501-2387           JAXUCZ010000005.1  131904125-131905011
FEATURES             Location/Qualifiers
     source          1..2387
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q35"
     gene            1..2387
                     /gene="Spata6"
                     /gene_synonym="Hash"
                     /note="spermatogenesis associated 6"
                     /db_xref="GeneID:171413"
                     /db_xref="RGD:628657"
     exon            1..256
                     /gene="Spata6"
                     /gene_synonym="Hash"
                     /inference="alignment:Splign:2.1.0"
     CDS             206..1672
                     /gene="Spata6"
                     /gene_synonym="Hash"
                     /note="spermatogenesis-associated protein 6;
                     kinesin-related protein HASH; spermatogenesis-related
                     factor 1"
                     /codon_start=1
                     /product="spermatogenesis-associated protein 6 precursor"
                     /protein_id="NP_599219.2"
                     /db_xref="GeneID:171413"
                     /db_xref="RGD:628657"
                     /translation="MPKVKALQCALALEIRSVTCPGVVLKDKEDIYLSICVFGQYKKT
                     QCVPATFPLVFNARMVFEKVFPEAVDPGDVVAQLEYDTAVFELIQLVPPVGETLSTYD
                     ENTRDFMFPGPNQISGHHDSNRQVTMRRISGLRGIAPKLEFSTTSVITECLISSRKCR
                     TQDKFTYHSAPVEKPHGRLQCRTSRSQKKKSKSPERSKYCINTKNYEQPTISSKSHSP
                     SPYTKRRMCELSEDTRRRLAHLNLGPYEFKKETDKPPFVIRHVDPPSPRADNFFGSPG
                     RDCERDGWVRMHSDHPHLGCCRAKDYKVIRSPHGRDFEDPFERCEDYLSPRTCSKPQH
                     SARTLLVHSAPSTTPKHCASPVLNRASLRERFHSDWCSPPNCDEIHDRVKDVLKSHQA
                     HGRHLCEERDPEKEDELELKRSLLYRDSAYDSDPEYSSFQRPRGSFHLDDGECWSNRA
                     ASCKGKSHRPVFENSMDKMYRNLYKKACSSVSHTQESF"
     exon            257..394
                     /gene="Spata6"
                     /gene_synonym="Hash"
                     /inference="alignment:Splign:2.1.0"
     exon            395..443
                     /gene="Spata6"
                     /gene_synonym="Hash"
                     /inference="alignment:Splign:2.1.0"
     exon            444..485
                     /gene="Spata6"
                     /gene_synonym="Hash"
                     /inference="alignment:Splign:2.1.0"
     exon            486..610
                     /gene="Spata6"
                     /gene_synonym="Hash"
                     /inference="alignment:Splign:2.1.0"
     exon            611..691
                     /gene="Spata6"
                     /gene_synonym="Hash"
                     /inference="alignment:Splign:2.1.0"
     exon            692..985
                     /gene="Spata6"
                     /gene_synonym="Hash"
                     /inference="alignment:Splign:2.1.0"
     exon            986..1073
                     /gene="Spata6"
                     /gene_synonym="Hash"
                     /inference="alignment:Splign:2.1.0"
     exon            1074..1114
                     /gene="Spata6"
                     /gene_synonym="Hash"
                     /inference="alignment:Splign:2.1.0"
     exon            1115..1299
                     /gene="Spata6"
                     /gene_synonym="Hash"
                     /inference="alignment:Splign:2.1.0"
     exon            1300..1399
                     /gene="Spata6"
                     /gene_synonym="Hash"
                     /inference="alignment:Splign:2.1.0"
     exon            1400..1491
                     /gene="Spata6"
                     /gene_synonym="Hash"
                     /inference="alignment:Splign:2.1.0"
     exon            1492..2387
                     /gene="Spata6"
                     /gene_synonym="Hash"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 caggctgcca tgacaacgtg tccgcgcccc gcgctcagct gctgttcggg cgggacccag
       61 gctggaccgc gggccccggc ctgggggcca cagctgccac ctccgccgcc acctcatctc
      121 ctccccgtct ccgtcccgcc ccgagtcttc ccgccgtagt cgggccggag gccggggtcc
      181 ctccccgccg tgccaccctg cgcggatgcc gaaggtgaag gcgctgcaat gcgccctggc
      241 gctggagatc cgctctgtaa cttgtccagg agtggtgctg aaagacaagg aggacatcta
      301 tcttagtatc tgtgtgtttg gccaatacaa aaagacacaa tgtgtcccag ccacttttcc
      361 cctggtcttc aatgccagaa tggtgtttga aaaggtgttc ccggaagcag tagaccctgg
      421 agatgtggtt gcacagcttg agtatgatac agcagtgttt gagttgatac agctagttcc
      481 accagtggga gaaacactgt ctacctatga tgaaaatacg agagatttca tgttcccggg
      541 tccaaaccaa atttctggac accatgattc aaaccgccag gttaccatga ggaggatttc
      601 tggtctaaga ggaattgctc caaagctgga attttctaca acttcagtga tcaccgaatg
      661 tctgataagc tcaagaaagt gccgcactca ggataaattt acttaccatt cagctccagt
      721 tgaaaaaccc cacggcagac tgcaatgtag aacatcaaga tcacagaaga aaaagtccaa
      781 gtcaccagag aggagtaaat actgcataaa caccaagaac tacgaacagc ctacaatttc
      841 ttcaaagtca cattctccat ctccctacac aaagagacga atgtgtgagc tttcagaaga
      901 cacccggcgg cggctggccc atttaaatct gggaccctat gaattcaaaa aggaaacaga
      961 taagcctcca tttgtgatta gacatgttga tcccccaagt cccagggctg acaatttttt
     1021 tggatcacct ggcagagact gtgaacgaga tggatgggtc aggatgcaca gtgatcatcc
     1081 tcatcttggc tgctgcagag ccaaggacta caaggttatc aggtcaccac atgggagaga
     1141 cttcgaggat ccctttgaaa gatgtgagga ctatttgagc ccaaggacat gcagcaagcc
     1201 ccagcattca gcaaggacct tactagtcca ttcagcacct tcaacaactc caaagcattg
     1261 tgcaagccct gtgctaaaca gagcctctct cagggaaaga ttccattctg attggtgttc
     1321 acctccaaac tgtgatgaga tccatgaccg ggtaaaagat gtcttgaaat cacatcaagc
     1381 tcatggaaga catttatgtg aagagcgaga cccagagaaa gaagacgaac tggaactgaa
     1441 aagaagtctt ttatatagag actccgccta tgacagtgac cctgaatata gctcctttca
     1501 gcggccgcgt ggctctttcc atttggatga tggtgaatgc tggtccaaca gagcagcctc
     1561 ttgtaaaggg aaatcccacc gacccgtctt tgagaacagc atggacaaga tgtacaggaa
     1621 cttatacaaa aaagcctgta gttctgtttc tcatacacag gaaagcttct gagaccatct
     1681 tccgtacact gtataagcgt ccatgtcaac ctctcaatga aagcgtttga tgtcatctgt
     1741 atttgtatgc ctttctttat aacagatgtt cactgagtaa cagacttgaa cccagcatat
     1801 ttcttcaaat ggtaacttat cacagccaag cctttattac agaagaatgt gctgcttcca
     1861 atgtcaaaac tctacaatat agtcacaact tccagtttgt gacaaggcta tcctgccacg
     1921 atcctgtcac cattgacaaa ctgaagaata ggttctttct agaatgttct tccactatta
     1981 ctctcttaac tttccacctg cttggctaat tatcttatct gggtaatatt taatatcagc
     2041 ttcctgttct tagtaatgag caaaacaaca ttctctgcag aaacaaattt taagaatttg
     2101 aacctgtgct aacaaatatt atctactttt tcaccttaga agaggctatt gtatttctta
     2161 ggtcctaaaa accagttttc tttgtaaagc tcacatatgc actcacttct tctctagaaa
     2221 accagttgag ttaccgcaac aactatgtag ctaatatttt agtcttgaat tatttgcaat
     2281 attttcttct tgagaaatac attttgatgc aaacaataag tgaagcagtc tgtgttagta
     2341 agcatgtaga aactaaaaat aaacaattga aaataaaaga attgtaa
//
