LOCUS       NM_001002852            1086 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus spermatogenesis associated 4 (Spata4), mRNA.
ACCESSION   NM_001002852 XM_224832
VERSION     NM_001002852.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1086)
  AUTHORS   Choi,E., Lee,J., Oh,J., Park,I., Han,C., Yi,C., Kim,D.H., Cho,B.N.,
            Eddy,E.M. and Cho,C.
  TITLE     Integrative characterization of germ cell-specific genes from mouse
            spermatocyte UniGene library
  JOURNAL   BMC Genomics 8, 256 (2007)
   PUBMED   17662146
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1086)
  AUTHORS   Liu,S.F., Ai,C., Ge,Z.Q., Liu,H.L., Liu,B.W., He,S. and Wang,Z.
  TITLE     Molecular cloning and bioinformatic analysis of SPATA4 gene
  JOURNAL   J Biochem Mol Biol 38 (6), 739-747 (2005)
   PUBMED   16336790
REFERENCE   3  (bases 1 to 1086)
  AUTHORS   Liu,S.F., He,S., Liu,B.W., Zhao,Y. and Wang,Z.
  TITLE     Cloning and characterization of testis-specific spermatogenesis
            associated gene homologous to human SPATA4 in rat
  JOURNAL   Biol Pharm Bull 27 (11), 1867-1870 (2004)
   PUBMED   15516739
  REMARK    GeneRIF: expressed specifically in the testis only; expression
            occurs in a development stage-dependent pattern; cloned
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AY653229.1.
            
            [WARNING] On Mar 19, 2025 this sequence was replaced by
            NM_001002852.2.
            
            On Aug 30, 2004 this sequence version replaced XM_224832.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY653229.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1086
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16p11"
     gene            1..1086
                     /gene="Spata4"
                     /gene_synonym="Srg2; Tsarg2"
                     /note="spermatogenesis associated 4"
                     /db_xref="GeneID:306441"
                     /db_xref="RGD:1303065"
     exon            1..243
                     /gene="Spata4"
                     /gene_synonym="Srg2; Tsarg2"
                     /inference="alignment:Splign:2.1.0"
     CDS             29..1000
                     /gene="Spata4"
                     /gene_synonym="Srg2; Tsarg2"
                     /note="spermatogenesis related gene 2"
                     /codon_start=1
                     /product="spermatogenesis-associated protein 4"
                     /protein_id="NP_001002852.1"
                     /db_xref="GeneID:306441"
                     /db_xref="RGD:1303065"
                     /translation="MAAAGRAEESLPLPAAESSKTTLPTPPAVPAARKPKKCLVYPHP
                     PRSSRLCPSVLRWLQGLDLSFFPRNVTRDFSNGYLVAEIFCIYYPWDLRLSSFENGTS
                     LKVKLDNWAQIEKFLAKKKFKLPKELIHGTIHCKAGVPEILIQEIYTLLTHQEIRSIQ
                     DDFANFTDYSYQMRLPLVPRSTVSKSIKNNIRLSELLSNPNILSNELKIEFLFLLQML
                     QRKLSRKLNPGKPSLEKGWFDIKPTVGEITVGHLPAHSYKHKYKSKVSKERAVSSLSK
                     SGNDVQPHREIHVKQNGKPCDATAKPMINVEETMKDTEEVALKKSCH"
     exon            244..373
                     /gene="Spata4"
                     /gene_synonym="Srg2; Tsarg2"
                     /inference="alignment:Splign:2.1.0"
     exon            374..492
                     /gene="Spata4"
                     /gene_synonym="Srg2; Tsarg2"
                     /inference="alignment:Splign:2.1.0"
     exon            493..734
                     /gene="Spata4"
                     /gene_synonym="Srg2; Tsarg2"
                     /inference="alignment:Splign:2.1.0"
     exon            735..851
                     /gene="Spata4"
                     /gene_synonym="Srg2; Tsarg2"
                     /inference="alignment:Splign:2.1.0"
     exon            852..1086
                     /gene="Spata4"
                     /gene_synonym="Srg2; Tsarg2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctgttgccat agaaacccac aaagcatcat ggctgccgcc ggccgggcag aggagagttt
       61 accactgccg gcggcagaat catccaagac aaccttacct acaccaccag cagttcccgc
      121 cgcaaggaag cctaagaaat gtctggtgta tccacatccc ccgaggagct cccgcctgtg
      181 tccttccgtc ctgcgctggc tgcagggcct ggatctcagc ttcttcccga ggaatgttac
      241 cagggatttt tcaaatggct acctagttgc agagatattc tgtatatatt acccctggga
      301 ccttcgatta tcatcctttg aaaatggtac ttccttgaaa gtcaaattgg ataactgggc
      361 acaaatagag aagtttctag cgaaaaaaaa atttaaacta cctaaagaac tcatccatgg
      421 aacaattcac tgtaaggctg gggtgcctga aatactgatt caggagattt acactttact
      481 cacccatcaa gaaattagaa gcatccagga tgattttgct aatttcacag actatagtta
      541 tcagatgcgt ttgcccctgg ttcccaggag tacagtatca aagtctatta aaaataacat
      601 taggttatcg gaactactaa gcaatcctaa tattctcagc aatgaactca agatagaatt
      661 cctcttcctt ttgcaaatgc tgcaaagaaa attaagcaga aaattgaatc caggtaagcc
      721 ttccctggag aaagggtggt ttgatatcaa accaacagtg ggagaaatca cagttggcca
      781 tcttcctgcc catagctata agcacaaata caaatcaaaa gtttcaaagg aaagagctgt
      841 gtcgtcttta tcaaaatcag gcaatgatgt ccaaccacat agagaaatcc atgtgaagca
      901 aaatggaaaa ccttgtgatg ccactgcaaa acctatgata aatgtggaag aaacaatgaa
      961 agacacggag gaagtagctt tgaagaagtc atgtcattaa tgtctaccac aatctgggta
     1021 tataatgaca cacccagtct tggatgtatt taaataataa ataacttaac ttggtgtctt
     1081 aaccat
//
