LOCUS       NM_001024343            1365 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus SPATA31 subfamily F member 3 (Spata31f3), mRNA.
ACCESSION   NM_001024343 XM_575807
VERSION     NM_001024343.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1365)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1 and BC082005.1.
            
            On Sep 13, 2012 this sequence version replaced NM_001024343.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC082005.1, SRR26643293.27299.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-19                JAXUCZ010000005.1  61888990-61889008   c
            20-1365             BC082005.1         1-1346
FEATURES             Location/Qualifiers
     source          1..1365
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q22"
     gene            1..1365
                     /gene="Spata31f3"
                     /gene_synonym="Fam205c; Fam205cp"
                     /note="SPATA31 subfamily F member 3"
                     /db_xref="GeneID:500445"
                     /db_xref="RGD:1561387"
     exon            1..179
                     /gene="Spata31f3"
                     /gene_synonym="Fam205c; Fam205cp"
                     /inference="alignment:Splign:2.1.0"
     CDS             33..1025
                     /gene="Spata31f3"
                     /gene_synonym="Fam205c; Fam205cp"
                     /note="transmembrane protein ENSP00000340100 homolog;
                     protein FAM205CP homolog; family with sequence similarity
                     205, member C, pseudogene"
                     /codon_start=1
                     /product="protein SPATA31F3"
                     /protein_id="NP_001019514.2"
                     /db_xref="GeneID:500445"
                     /db_xref="RGD:1561387"
                     /translation="MMLIPPFILWDVGYSVYTYGSIFIIALIIWQVKRSHRGLRMGPT
                     KSCAKCFRRIKQTPSDRATRAKRTSKEEAEKLQKLLDTMKSQGWLPQEGSVRRLLCPD
                     PSCSICNAMTLEIQQLLGVENKKTSSSLLRPSRSFSCLEALSPSKSLADRSSELTYQD
                     TRDVSLSSRFPQSQETDQQSTRSATPSIGDAVLQCYHSAPQQQLDPQGSKMTQDAKGL
                     SSSSTDEPGVPANQQKKRKKTKKLALKNQAAPTEVETENKMTFFSHWVNPEVKCDRQE
                     ESLVFSKYDTGAKPMTVEPEKTHSPVRDQAEGAEKKKKPECDLKAKPLRAKRNI"
     exon            180..225
                     /gene="Spata31f3"
                     /gene_synonym="Fam205c; Fam205cp"
                     /inference="alignment:Splign:2.1.0"
     exon            226..286
                     /gene="Spata31f3"
                     /gene_synonym="Fam205c; Fam205cp"
                     /inference="alignment:Splign:2.1.0"
     exon            287..774
                     /gene="Spata31f3"
                     /gene_synonym="Fam205c; Fam205cp"
                     /inference="alignment:Splign:2.1.0"
     exon            775..1341
                     /gene="Spata31f3"
                     /gene_synonym="Fam205c; Fam205cp"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aagcctagga gagggatgac tagggaagtt gaatgatgtt gatcccacca tttattctgt
       61 gggatgtggg gtactcggtt tatacgtatg gatccatctt cattattgca ctgataattt
      121 ggcaagtcaa aaggagccac cgagggttaa ggatgggacc taccaagagc tgtgccaagt
      181 gtttccgaag aatcaaacaa actcctagcg atagagcgac aagagctaag agaacatcta
      241 aggaggaagc tgagaaactg cagaagctgc tcgataccat gaaaagccag ggctggctcc
      301 ctcaagaagg aagtgtgcgg cggctcctgt gcccagatcc ctcttgctcg atctgcaatg
      361 ccatgactct ggaaatccag cagttgctgg gggttgagaa caaaaagacc tcttctagtc
      421 tactgaggcc ctcccgtagc ttttcttgcc tggaggcatt gtctccatca aaatcgttgg
      481 ctgaccggag ttcagagctc acttaccaag acaccagaga cgtttcatta tcatccaggt
      541 tcccacagtc acaagaaaca gaccagcaat ctactcggtc agccactccg tccattggtg
      601 acgctgtcct ccagtgttac cattctgctc ctcagcaaca gctggaccct caagggtcaa
      661 aaatgaccca ggatgcaaaa ggtctgtcat cttcaagtac agacgaacct ggggttcctg
      721 caaaccaaca aaagaagagg aagaaaacca agaaacttgc cttgaagaac caagcagcgc
      781 ccacagaagt tgaaacggaa aacaagatga cattcttttc tcactgggtt aaccctgaag
      841 tgaaatgcga caggcaggag gaatcccttg tcttctctaa gtatgacaca ggggccaaac
      901 ccatgactgt agagcctgag aagactcaca gtcctgtcag agaccaagca gagggagccg
      961 agaagaagaa gaagcccgaa tgtgatctca aagccaagcc tctccgtgcg aagaggaaca
     1021 tttgactttc ctcgactcct acagtgcctg cagagctcca gccaacgccc cctccgccca
     1081 agcaaccctg ggccccatgg ctactcccac aactgctttg aaactgtcta caatgtgtgt
     1141 caaccagctg ggaaatcgat gtcagctttc ctctcagaag gttctggttt acacaaggag
     1201 gataagcatt tcaagcaaaa agaattctta ggctcccaaa gttctgcatc ctcccgaaca
     1261 aaggctgtca cccgtcatcc tgtctactcc caagccagtg tgccatgata ttctccaaat
     1321 atactctata cttataaagc aaaaaaaaaa aaaaaaaaaa aaaaa
//
